RnoEX6027364 @ rn6
Exon Skipping
Gene
ENSRNOG00000004706 | Vit
Description
vitrin [Source:RGD Symbol;Acc:1564128]
Coordinates
chr6:1158184-1179162:+
Coord C1 exon
chr6:1158184-1158267
Coord A exon
chr6:1165856-1166041
Coord C2 exon
chr6:1179118-1179162
Length
186 bp
Sequences
Splice sites
3' ss Seq
GCAATTCTGTTTTCTTACAGGTG
3' ss Score
10.74
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGAGTAAGCCCCAAAAGGGAGTAACCTATCCATCAACTCTTACATATTCATCACCCAAAACTGCAGCGGCTAACGCAGGCAAGT
Seq A exon
GTGAGACCACAAAAGCCTATGAGAAGCCATCTCTTCCAGGGACAACCGCACAGCCTGTCACCCTGTCACAGGCTCTAGCTACCCCAGTAGCTGAAGCTACCCACAGAGCCACCTCAAAGCCATTTGCAGCATCTGTCACAAGCAGCTCCCGACCCCAACCTGTGGGCCACAGGAGTCAGGAGATGG
Seq C2 exon
AAGAGATGGCGACATGGAAGCCTGAACCAGTCCTTTTAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004706-'4-5,'4-2,6-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=0.937 C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAAGGGAGTAACCTATCCA
R:
TCTAAAAGGACTGGTTCAGGCT
Band lengths:
115-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]