MmuEX6079436 @ mm9
Exon Skipping
Gene
ENSMUSG00000024076 | Vit
Description
vitrin [Source:MGI Symbol;Acc:MGI:1921449]
Coordinates
chr17:78978694-78999208:+
Coord C1 exon
chr17:78978694-78978771
Coord A exon
chr17:78985998-78986183
Coord C2 exon
chr17:78999164-78999208
Length
186 bp
Sequences
Splice sites
3' ss Seq
GCAACTCTGCTTTCTCACAGGTG
3' ss Score
8.58
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAAGTAAGCCCCAAAAGGGTGTAGCCTACCCATCGACTCTTACATATTCATCATCGAAAACTGCAGCTGCTAAAGCAG
Seq A exon
GTGAGACCACAAAAGCCTATGAGAAGCCATCTATTCCAGGGACAACCATACAGCCTGTCACCCTGACACAGGCTCAAGCTACCCCTGTAGCTGAGGTCACCCACAGATCCACCTCAAAGCCATTTGCAGCATCTGTCACCAACAGCCCCAGACCCCAACCTGTGGGCCACAGGAGTCAGGAGATGG
Seq C2 exon
AAGAGGTGGACGGGTGGAAGCCTGGACCAGTCCTTTTAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024076-'5-10,'5-7,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=1.000 C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAAGGGTGTAGCCTACCC
R:
GACTGGTCCAGGCTTCCACC
Band lengths:
100-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: