BtaEX0039639 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024980 | VIT
Description
vitrin [Source:HGNC Symbol;Acc:HGNC:12697]
Coordinates
chr11:19241561-19268236:+
Coord C1 exon
chr11:19241561-19241694
Coord A exon
chr11:19252833-19253024
Coord C2 exon
chr11:19268192-19268236
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCAATTCCACTTTCTTACAGGGG
3' ss Score
7.45
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
TGGTGTGCTTGATAATTCAGGAGGGAAAATACTTGTTCGGAAAGTGGCTGGACAGTCTGGCTATAAAGGGAGTTACTCCAACGGTGTCCAGTCATTATCCCTTCCACGATGGAGAGAATCCTTTGTCGTCTCAG
Seq A exon
GGGAGACAGCAAGAGCAGATCAGAGCCCACCAGTTCCAGGGACAGCAGCACAGCCGGTCACTGTGACACAGGCGCCGGGGACCACTGCCATTGAGGCCACCCACACCACCTTGCCAAAGCCCTCCCCATCTGCAGGCTCCACCGCCAGCGGCCTCCGACCACAGCCCGCGGGCCAGAGAAGCAAGGACCTGG
Seq C2 exon
GGGAACCTGCCTTGTGGAAACCTGAATCAGTCCTTCTCGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024980_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=1.000 C2=0.375
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PD(45.6=89.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTGCTTGATAATTCAGGAGG
R:
TGCATCGAGAAGGACTGATTCA
Band lengths:
178-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development