MmuEX6079436 @ mm10
Exon Skipping
Gene
ENSMUSG00000024076 | Vit
Description
vitrin [Source:MGI Symbol;Acc:MGI:1921449]
Coordinates
chr17:78579354-78599868:+
Coord C1 exon
chr17:78579354-78579431
Coord A exon
chr17:78586658-78586843
Coord C2 exon
chr17:78599824-78599868
Length
186 bp
Sequences
Splice sites
3' ss Seq
GCAACTCTGCTTTCTCACAGGTG
3' ss Score
8.58
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAAGTAAGCCCCAAAAGGGTGTAGCCTACCCATCGACTCTTACATATTCATCATCGAAAACTGCAGCTGCTAAAGCAG
Seq A exon
GTGAGACCACAAAAGCCTATGAGAAGCCATCTATTCCAGGGACAACCATACAGCCTGTCACCCTGACACAGGCTCAAGCTACCCCTGTAGCTGAGGTCACCCACAGATCCACCTCAAAGCCATTTGCAGCATCTGTCACCAACAGCCCCAGACCCCAACCTGTGGGCCACAGGAGTCAGGAGATGG
Seq C2 exon
AAGAGGTGGACGGGTGGAAGCCTGGACCAGTCCTTTTAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024076-'11-17,'11-10,14-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=1.000 C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAAGGGTGTAGCCTACCC
R:
GACTGGTCCAGGCTTCCACC
Band lengths:
100-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types