GgaEX1063134 @ galGal3
Exon Skipping
Gene
ENSGALG00000010583 | VIT
Description
NA
Coordinates
chr3:33407789-33415866:-
Coord C1 exon
chr3:33415789-33415866
Coord A exon
chr3:33412568-33412774
Coord C2 exon
chr3:33407789-33407845
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCAATGTTCCTACAGGGG
3' ss Score
9.39
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGGGCAAGCCAAGAAAGGGTGTGACATATCCATCAACTCTTGAATTCGCTTCCTCAAAGAGCACAGCTGTTAAACCAG
Seq A exon
GGGACACTGTCCGCAAGGTGTATCAGACATCACCTGTACCAATGCCAACCACACAAATGGCAGCCACAACACCAACCCCAACAACCACAACCACAGATCCTTTCAGCACAACACCAAAGCCAACCACAACACCTGCAACAACAAGAACCACAACAGACTCAGCTGCAGCCAAGCCTCGACCTGGACTGCAGAGGGTCAGGGATACAG
Seq C2 exon
CATTCAGGGGCACTTCCACCTCTGCAAGTAACAGGAATATTCTGCGACCCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010583-'6-8,'6-6,8-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF115933=Med3=PU(8.3=88.9)
A:
PF115933=Med3=FE(23.8=100)
C2:
PF115933=Med3=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCCAAGAAAGGGTGTGA
R:
CTGCATTGGGTCGCAGAATAT
Band lengths:
132-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]