RnoINT0167019 @ rn6
Intron Retention
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169198246-169199528:-
Coord C1 exon
chr5:169198857-169199528
Coord A exon
chr5:169198494-169198856
Coord C2 exon
chr5:169198246-169198493
Length
363 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TGCTGCCTCCTCTACTCTAGTGG
3' ss Score
7.06
Exon sequences
Seq C1 exon
ATTATGGATGGTTCCTTCGTACAGCACAGCGTGAGGGTTCTGCAGGAACTCAACAAGCAGCGTGAGAAGGGCCAGTATTGCGACGCCACGCTGGACGTGGGGGGCCTGGTGTTCAAGGCGCACTGGAGTGTCCTGGCGTGTTGCAGCCGTTTCTTCCAGAGAATCTACGGGGATGGCTCAGGGGGCAGTGTTGTCCTCCCTGCAGGTTTTGCTGAGATTTTTGGCCTCCTGCTGGACTTTTTCTACACTGGCCACCTCGCCCTCACCTCAGGGAACAGGGATCAGGTGCTCTTGGCAGCCAAAGAGTTGAGGGTGCCTGAGGCTGTGGAGCTATGTCAGAGCTTCCAGCCCCAAACCTCAGCGGGACAGGCACAGAGTGGACCGGGCCAAGTTTCCTCCCAGGATGTGAAAAGCCACCTCAAGGAGCCAACAGACTTGGATGAGGAGGAAGTTTTCAGGACTCTGAGCCTGGCCTCTGTGGATCAGGAGCCCAGAGACGGTGAGCAGCCCCAGCTCAGCACACCTGCCCAGAGCAGCCCGGCCTTCCTCTGTGGGAAACTCAAGCAGGTGTTGAAGCCTTCTCCCCCAGCGGACAAAGAGTCTGAGGACAGCAAAGAGCCCCCAAGGCCTTTTGAAGCTGAAGGTGCCCCACTGCAGGGCGAGAGCAATGAG
Seq A exon
GTACTGTTTCCAGGGTGCTGAGCTGGGGAGGCAGGCATAAGGGTAAAGACCGGCACTTCTGGAGCAGACATAGGAAGCCAGTGGTCTCAGCTGACCTCCTGCGAGCTACACTTGTCCATGGTTGCCAGCTTCCTTGGGGTGGAGTGAGCATCAGGGTTACGGGTATTTCCTTAGGTTAGTCAACCTGGCTGCTAACACAGCCATTGTGCTCCAAGTCCAACATTGCCATTTTCTCTGGACCCGGAGGGAAAGGGTCTCTGCTGAAGGGACTGTCCAGGGGGTGGGGCTTATGTTGGAGTTAAAGGCAGGTCCCTGCTGATACCTGGGTGACCCTATCCCCTCCTGCTGCCTCCTCTACTCTAG
Seq C2 exon
TGGGAAGTGGTGGTTCAAGTTGAGGACGACAGGGATGGTGATGGCGATTATGCATCTGAGCCTGAGACTGTGCTGACCAGGAGGAAGTCAAAAGTGATTAGAAAGCCGTGTGCGGCAGAGCCAGCCCTGGGTGCAGGCTCCCTCACAGCCGAGCCCACCGAGGGCAGAAAAGGTGCAGCAGTTCCGGTCGAATGTCCCACATGTCATAAGAAGTTCCTCAGCAAATACTACCTAAAAGTCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595:ENSRNOT00000012745:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.578
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=46.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(24.0=7.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAAGGAGCCAACAGACT
R:
TTGACTTCCTCCTGGTCAGCA
Band lengths:
348-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]