RnoINT0167756 @ rn6
Intron Retention
Gene
ENSRNOG00000003455 | Zfp13
Description
zinc finger protein 13 [Source:RGD Symbol;Acc:1304577]
Coordinates
chr10:12913367-12913854:-
Coord C1 exon
chr10:12913671-12913854
Coord A exon
chr10:12913459-12913670
Coord C2 exon
chr10:12913367-12913458
Length
212 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AGGACCCTGTCTTCCTACAGTTC
3' ss Score
8.22
Exon sequences
Seq C1 exon
GTTTCAGGTAATGGGCAACCCTGTGGAGACTTGCTCTCTGGGCAGGAGGAGACAGTGCCCTTGGAAGCCTCTCAGGAGTCAACACATGTTAAGGCAGAGCCGTGCTGTGAAAGGGCATCACCGGAGGACAGGACTCCAGGAACACGGGGCTCTAAGGACAAAGCCCCTTTCCTGCCTGGTGGAG
Seq A exon
GTAAGACAAGTGCTGCTTTCTTGTGGAGGCATCCTGGGGAGGGTTGAGGGTTTTACCAAGGGATGGAGGGGCCAGATTTCTAGCTGCCTCCTGGTAGCTTTAGAGTGAGTGACCCGCTTCTTGGGTTAAATCCAGGGTGAGGTTTGTGGTAGCTGGGGAGCGTCAAGGTCCAGCAGAATGCTGGCTGCTCTGAGGACCCTGTCTTCCTACAG
Seq C2 exon
TTCTTCCTTCGCCCTGGATTCCCATACTGTCCCGAGGGGGACGGACCAGAGAGCGACAGGTGGCCGCGGCGCTCCTCACTGCCTGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003455:ENSRNOT00000004589:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCTGTGGAGACTTGCTCT
R:
CTGGGACCAGGCAGTGAGG
Band lengths:
260-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]