HsaINT1047329 @ hg38
Intron Retention
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:HGNC:12996]
Coordinates
chr16:3115355-3115920:+
Coord C1 exon
chr16:3115355-3115568
Coord A exon
chr16:3115569-3115828
Coord C2 exon
chr16:3115829-3115920
Length
260 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GGACCTCTCTCCTCCCACAGCCC
3' ss Score
9.68
Exon sequences
Seq C1 exon
GTTCCAGATCGTGGACATCCTCATCAGGAAATGCCTTCTAAGCTGGGGGAGGCGGTACCTTCAGGGGACACTCAGGAGTCACTGCACATTAAGATGGAGCCCGAAGAGCCACACTCCGAGGGGGCATCGCAGGAGGATGGGGCTCAAGGTGCCTGGGGCTGGGCACCCCTAAGTCACGGCTCTAAGGAGAAAGCTCTCTTCCTGCCTGGCGGAG
Seq A exon
GTAGGAGAGGGACGGGGAAGAGGCGCTTTCCCAGGGAGGCAGCTGTGGGGAGGTGGAGGTTTGGCCCAGGTCCAGGTGGGGCTGAGGGTCTCTATGCCAGCAGGGGACGCTATCCCCCCATGGCCCACAGCCCCCTGGCAGCGTCAGAGCCATCCGACCCTGTCCTTGGGTCGGGCCAGGGGTGGAGTTTGAGGCAGCTGAAGTAGCAGCAGGTCCAGCAGGATGAGCTGATCACCGTGAGGACCTCTCTCCTCCCACAG
Seq C2 exon
CCCTCCCCTCCCCCCGGATCCCCGTGCTTTCCCGAGAGGGGAGGACCAGAGACCGGCAGATGGCTGCAGCGCTCCTCACTGCCTGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386:ENST00000382192:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=NA C2=0.665
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGGACATCCTCATCAGG
R:
GGGACCAGGCAGTGAGGAG
Band lengths:
297-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains