RnoINT0168089 @ rn6
Intron Retention
Gene
ENSRNOG00000003634 | Zfp354a
Description
zinc finger protein 354A [Source:RGD Symbol;Acc:2967]
Coordinates
chr10:36589181-36590066:+
Coord C1 exon
chr10:36589181-36589213
Coord A exon
chr10:36589214-36589939
Coord C2 exon
chr10:36589940-36590066
Length
726 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GAGTCATCTGTCCCTCACAGGTG
3' ss Score
8.37
Exon sequences
Seq C1 exon
ATGGCTCCTGAGCAAAGAGAAGGGGCCTCTCAG
Seq A exon
GTAAGCGGCTTGCCATTTCGCTTCTTAACAGAAGGAGGGGCTTTTGTTTGGTTTCCCTTCTGACAGTTATCCACACAGTTCAGCCTTCCCTAGGATTCAGAGCCCATGCTCTCCTTGGAGGAATTGGTTCTCTCCCCACGGGTGGTGGATTCTGTGTGTTCACAGTTCTAGTCTTCTGTATTTCTTGATAGACAGGCTGTCATTGTCTGGTGCCTACAATCTGGTGTGTGCCTACAAATTTCACAAGTAACATACCAAGTGCCCTGGGACAGAACACACATATAGACTTGAGAAAATTCCCTTTTCCCCCCCGTCCCTGCCTTCCTCACTCGTCTGCGTTTCTTTCTCTGCCCTTACCAAGATTGATTTTTATTTTCTCTTCTTGACAATCCCTACGTTGCTCACCAAGCCTTCTTCAGCCTATGGTGGTTGATTATTTTTCCATTTTACTTTATGGGTCTTATGTTTTGCTTGTTCAATTCCATTGAAGTTTTGTTTGTCATTATGCATGTATGTGTGTGTGTGTGTGTGATGTGTGCATACAAGTGTATATGTGTATACATGTGTCATGTGTTCGGATGGCCGCATCTGTGTGTGAGAATGTACATCTGCACATGGCTGTCGAAGCCTGAGGCTATAGGGTGACTTCTCCCACGGCTTCCCAGATCTTCTATGTTGAGTCAGAGTCTCTACCTCAAAGCTCATCGAGTCATCTGTCCCTCACAG
Seq C2 exon
GTGTCAGTGACATTTGAAGATGTGGCTGTGCTCTTTACTCGGGACGAGTGGAAGAAGCTGGATCTGTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAATTACAGCAACCTGGCCTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003634:ENSRNOT00000045596:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]