RnoINT0168249 @ rn6
Intron Retention
Gene
ENSRNOG00000031576 | Zfp455
Description
zinc finger protein 455 [Source:RGD Symbol;Acc:628788]
Coordinates
chr2:86996497-87003519:+
Coord C1 exon
chr2:86996497-86996845
Coord A exon
chr2:86996846-87003392
Coord C2 exon
chr2:87003393-87003519
Length
6547 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
TTCATTGGTCTTTATTTCAGGAA
3' ss Score
9.46
Exon sequences
Seq C1 exon
CTTGTAAGCCAAATGTTTCTGTCAAAGGCTTGACTCATATCCATACTTCTGTTGTGGTTCTGGGGTCGGAAACCAAGCTCATTACCCATAGTTGTTATCCAGATAGAGCTTTGTCTTCCCACACTCCAAGGCGGGTTACAATCAGCAAATGCGGTAAAGAGAAGACTTGTACCCTGGGTTCCGGAATTTCCTTCGCACAGACTTCTGGGAGATGTAGTCTACACCACTGTGACCGCAAGGAGTCTTCCGGGAAATCCCATTCTGACTTCAGGTCTGTACTCGTGGGTCTTTCTCAAAGTTGGCGGGAAAGCGTGTGCGGCTGTCCATTTCTGTTGTCCGATACATGGAG
Seq A exon
GTTGGTCCGGGGAGCAGCGTAGCCTGGGGTTCGGGGAGCCGGGCTCTGTCTCGGAGGGAGCAGATCTGGGGGTGAGAGGGCGGAAGAAGCTGCTTGGACTTGCTTTGCTGAACTGGCTGGGAAAGTTGAGGCTGCAGTTTTGGCCTGAGGGCGTTTGGGATTGTGCCCTGAAGGCTTCCTAGGGCACCGCGTGCAGCCCGCGTCTGCCTTGGTGCTCTGGTACACTGGAGCAGCTTGGTAGTGGGAGAATAGACAATAATGCAAGGGCCAGTATTGCAAACTAGTGGTCAATTGACTACTTGCTCCCAAGATAGTGCAGGAACTCTCAGACCTTCATTGCTCTAAGCACACTTCCCTGGCTGCCCCATTCTCACCTATATGATGTCAGATTCCTCAGTGTAAATGGTGTTTCTGCCGCTGCCCCCCCACCCCCCCCCCGTGTACTCTGTAGCCAGTTTTTAGTAACGGCCTTGAGGTTCGATTGTGTTTACTTTCTCTGTTAAAGAATTAAGAGGAAACAATCCTAGCCACAGCAGGTGGCATGCTGGGAAATTCTGGAACACAGCCGACAGATTTGCCTGAATCCACGAACTCTGAAAATCTTTGACTAGGGATGAAGAAACACATGCATTGGCACACAGACAGGAACCTCTACAAGGCAGAGTGGGAACTGGAGGAGCTCACAACATATTTCACCTTGAGGGCTGTGTTTTCTAAAACTTTTGACAGGACCTCCATCCCTAAATTGTAAAATTACAGTTGAGTAATTTTTAAAAAAGAGAATGTCTGCTTGGCCCACAATGGTTGTGGTCAACATGACATTATTAGGGCTTGAACTTATTGAGAAAGTTTATGAGCAGGGTATTAGGAGCTGGTGAAAAGCTCACATGACCATCTTTGTTTTAGGGGGTCAGGCTTTTGTGTCAGGTCAGCAGGGTGAGGGAGAACTCCCAGACAGGTGTGTATTGATGTCATTTAGAGTAAACAGAACTGTGATAGAAAAGAAACTTGAGCCTACTCTGAGGCACAACCCAGTCATCTCTGCATTTGTGAGGGGGTAGGGGGACAGGACCCCCTGGTCATCCCCTGCTTCATAGCAAACTCAAGACCAATGTAGGCTACCTCAGTCTGTCAGAAGACACTTTAACATACTTGATGCACATAAGAAATACTTTCTGTGGTTCATTTCATGTCTCCCAGTGAGCGTCATGGCAAATCCCTGCAATCAGCACTTTGGTGATTTACAATCTGCATGTGCTTCTCTTCTGCTGACACATTCCACATATAGTTTAAACTTTTTTCGATAACATACTGTTGTTAAAGACGTTAGATTTGGGTGATTAATTGCTTGCATTTACTGTGTGAGGAAGAATTCTGCTCTTTCCCCTGCTTGAATATTCTGCCTGTTTGCATCAAATTTCCACTCCTTTTGGACAGTAGAGTTTGTGTTAGATTCTGCCATGACCTGATGATGCTTTCTTCTGGTCTTTCCTGAATTCTTCCAGTTTCTTTCTTTCATATCTAAGCAGAGACTCCATAATTTCTTCATTTCCTTTGTGCAGTTCTTGACTGATGCAGGCTGCTGTGGTTTGTATCCCTGTGTCTTTTTCTGCCTTGTCACCTGGCACGCCTTCCCGTGTCCCTCCTCCAGAGGTTCAGCTGTGTGCAAAGGCTTCTTACACTTACCAGGAACAAAACGGCTTCTTCCACTGTCCCTCACATGTGTACTGCCATCTATAACAGTAAAGCAGACTGCTAGTGTGGGACACCTTCCTCTTGCACAGGTTTAAGCCCAGGTCCCCTTGGTGTGTAGTTCTCTCACTCTCCTCCCAGGGTTCCTTCATTGTATCCTAATGTTAGTACGAGGGGAGGAGTTCCTTGTCTTTACAACTCAGGCTTGAACCTTGCTGTGTTAGATAAGTAATAGCTTGGAAACTGGATAAGAGGTGTGCTGGGTGATGACATTCAGATCCTGCTGATACATATGATTATGTCAGAGGCTATGAAGAAAAATTACAGAAGAGTCAAACAGTTGCCAAACACATGTGCAAGTAATAAACCTGAGCAATGCAGATCCTCATTGCATTGTCATTTTCTGTTATGAAAGTGTCTATCTTCATAGGGTCCTTCATAGTCCTTTTAAAATAAGGTGACATGTTATGAGTTAAAAGCTATGTCTGCTTGCCTGGTCAACTCTTTCGTATTCTGTATTCCATCATTCTCTTCTTTCCAGGATCTATGTAAAACTAAGTCATCAGAGTGCAAATTCATACTCTTTGATGAATATACTCCATTTACTGGTGCTTTAAAAAGACTCATAAACTATATACAGACTATTAAAATCCAAAAATACATCTAGAGCCCTAATGTATGGATCAAACATGGTATTTATTTTAAAAGTAAAATTCTCATTATATAATCCTTACTTTCCAAAGGGGGAAAAAAACCATCACCTTTGGTCTTTCACATTTTTCACATTTTATTCCATTTTCTGAGTCCTATAATTGCAAGATATTGTAGCTTGAGGCAAAAGGTAACGATTGTATTCTGCCACCTTTATGCTATTAAAGTCCTAGGACAGAGACCTAGTGTGGGGGGCCATTTGCCTGCTCTTCTGATGCAGAAAGAGAGAGAAACCTGTCAGGCAACTTCATGGCAGGTCAGAACCTATGGGTAGACTTCCTGGCCCACTGAGGCATTGAAGGAGAGGAGGAGGTGCACCCAAGTGTCAGGGTGAGGGGATGAACATTGGATTGGCCACGGTGGAAGGAACAGGGAGGCCTCTGTTTAAGAACAGATGTATCGCGTGTATTTCTGCAATTGTTTCTGTTTCTTTATAGCGTTGCTTCCCATGGTACTATGAGGTATAAAAAGGCTGTGAAAATAAACTCAATGTTGCTGCCTGCTGCCTACCTGCTGCCTGCTGTGGTATTGACCTGCAGTCATCCCAAGTCTATTTCTTGGCTCTGCATCTCTTTTTTTTTTGGTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCTGCTCTGCATCTCTTTTCTGCCTTTTCTATAATCCTCTCTCCCCATTCTCAGAGACTGTTTGACTCTCAGCACCACCTAGGAGTTGCTGCTTCGGGATCTGTGTTGTATGTATGTTGAGCCCTATCCAGTATTGACAGACAGGCTGGCTATGAATGGAGACTCCGTATTGTTTGGAACCTGATCAGGAATCCAGCCCTCTCTTTACATCTCACGTTGACTTCCCACCGATGTCCTGGACACTGATGGGAGGCGCAAGAGTTCTTAATATATCCACTCTGTCCATTTTATTGCTCTAGCCTTCCTCTTGGACTGGCTTCCATCCAAGTAGAATATAAACATCGACCTCCCAGTTACTGTAAGAGTATGTAGTCTGTGTTAACGAGTGACAGTGTTCCTGCCTGAGGTCAGACATCATTTGCTTTCCTTCCCCATAGAAAGTGAATTTTGTAAGTCTCTAATTCCCCTGGAATGTTTGCTGTTAATTGTACTGGCTAAAATCCCTACTAAGTGGTATGTCAGGTCCACTGACCTCTGCCCACAGTGTCTCACAGGAGATTGTTCTCAAGACAGCAGACACTTGTCATAGCCAGTGCGGGGCAACATAGAGTGAGCCTCATAGTTAGTTCTCCTTTGCAAACATGCTCTGTTTCTCTCACAGAAAATTGTTTTCATCTTCACTCTGCTCTGGGCTCTCATCATTCTGGTTTTCCCACATACTTGGTGATCCTATGGTTAAAAAGAGTGTAATCCGGTTTTTCTCATTTAGTTGTCAAGACAGGAGGATACTTCTCTACTTACCGTAAAGACTCTTCTAAGACATTTCAATTTCTTTTCCCTTGAGAAACTTCTATTCACCAAAGTGCTTCATTCTGCTGGTGCTTTGGAGATGTACTGGCCTCCTCATCGCTGCTGAACTCTGCTCATGAAACCAAAGACTATTTTTTTTCTGCAGTTGTTTCTTTAAAGAGAATATATTTCAGTTATCCTATAAAGTCTTGTGACAAAAGCTATTCCCTTCTCTCCACGGTGAAAACACCTTACATTTCAGACACAAGACTTGGGATTGCAGCTGGATCTGTCATGAAGATCTACAGAAGGATGCGTTGTCCATAGTGATTGAAGGTGCTTTGCCAGGTTCCAAGGGAGAGAAGCAATAAATAGCCTCTTATGGCAGTGGGCCACAGCAATGTCCTGTATGGCATTCTATCCCTAAAGAAGTCGCAGTGCCACTCAATATCTTGACATGAGTAGAAGCTGTCCAGTGGGACTTAAAGCTTCATTAGTAGAAGTTACATCATGCTTGGAAGCTGATACAGGTGACTTGTTAGGTTTAAATCTTAGAGGAGAACATACTAATGATATTTTACTAAAGCATCGTAAGTGCTAACTGCATTCCGAATACTTTTCCTTAGACCTACACATAAGTGTGCAGCTCTTACTGCTCAAAGCACTTCTAGCTGCCGCACAGAGAGCATCACAGAAAACCAAAACTTACCAAAAATGCAGAGAACTATGGATGATCTTGTGATCTGACCCAATAGGTATGTCTACACTGCAATTTCTGCACATAATAACCAGGGGCTATTTCTGGAGCAGAAGCAGTTTGGTATGAGGACTAGAGGTCCATGTCAAAACCAGAGGTTTGCTGTGAGTCTGTGCCTCTTAGGAAGAGAAGGGAAGCTTGATAACCCACCATTTTGACTGCCTGAGCAATGACATCAGCACGTGGTGCCCTGCAGGGAGAATCTCCTAACTAGATGAAGAAGTATGGGCATCTAAGTCCTGCTGAGAGAGGGAGAACTGATGTTTGCCAGATATGAGCCCACTTTGTGTTCCTCCAGTAACAAGGGTCAGTTCCGAAAACATAAATACAAGAGATGGAGAAGAGAATCAGCTGTTCTTATTTACATAGCTATGTGTAGATGTATATATGTATGTGGGTGTATGAAATAATAGTAGAGAAGAATATACTATGTATTTGTGATGGAGTGTTGGACAGGAGAGATATTGCAATGAGGAGATGGATGGGAAAATGATGTATTTAGTTTTTAATCAAAAATGTGTCAGAGAAAAAAATAGTCTTGTCATTTGTATCAATGTGGGTGAACCTGGAATTGTGTTCAGACAGATGAAGCTAGACAACACATGATCTTATCAGTTTGTTAAATGTAACTCATAGAAGTAGGAGGTTTAATGTGTTTTCCCGTTGACTAACGACATGAGGAAGCCAAGGCTTGGGGACCTCTTGAACAGTGGATGCTCTGAACCAGCTTCTAGGGAGAAGCTCCCAGTCCTGTTGCCCCAAATGCTGGAGGTGTGTAAGGGTATATTTCAGAAGCCTGGAATATTGTGGAATATTTGGTCACATTGTGCACCCCCAAGATTATGTTGTTTACTGAAAAACCATGTGTCTGGTTGTAGTGTGACTCAGGCTTAACACACACCTTTAATCCCTCTGGTGGGAATACAGACATGCTCTTAGTACATGCCCTTAGTATCTTTAATCCCACACGACGAAGGAATGTTGGTTTGTAGAAAGAAGCATCCATGTTTGAAAGTGATGTCTCATTGGGTAGCAGACAAAGTGATGAATCAGATTTTATAGAGTAGGCTATGTCCAACTCTCACGAGAAGAGAGAAGATAGGGAAGGTACTTCGGAGAGCAGGACAGAGAGAAGGAAAAAAAAGAAAGAGGCCTTTTACTGGGATAATTTTACAGAGACAGGTTGCATGGAGAAAACAAGCTAGACACAGGTGAAGACAGAACAAGCCATAGAATAAGTAGAAGCTAGGAGATTACAGTAGATTGACAGTATGAGGGCAAGCTTCGTAACATAGGAGAAGCTGAAAAAATTGCCAGACTGCATTAGTCAGCCTGGAGAGGATTTTGATTCACAATAGCTGAGTTTAATCAGCCAGTTAGAATTCAGGAAGAACTAGAAACAGTGAGATTACTCAGCAGCAAGTCTCAGAGACTGAAAATGTTGTAGGCCTAGACGAGCTTCCAGGACTAGGCCTTGGTTAGCAGTAAGCCTCAGAGACAACAATTACATCATGCAAATCAAAGTTACTTTTTATGTCAAAGGCAGTGATTGAAGAGGTGAGCTTATCCAAATTGAGAAAAACAATCCAAAGCTTACTCATGCAGTTACTACAAAATTGCCCATTAATACATAAATTGCTGATATTTTTACATTAATTAAAGGAAAAACAATGACTTTTTTTCAGTGTGACAATCTAGGACTGTATTGAATAAAACAAACAACACCCCCCCTCAATTCTGCCATTAGATACTTTTGAAATAATGAAAATAGCATCAACAATTATATTTTTCAGCTATGGCACACCCAGTGGATCTTGGTATTTATGTTATTAATGGTTTTTATCAATTTTATGAATGGTTTAACTAGTTTATATTATTAATGGTTTTAACTAATTAAAGGTGTGATCTCATTCATTGGTCTTTATTTCAG
Seq C2 exon
GAAATGCTGTCCTTCTGGGATGTGGCCATTGATTTCTCTCCAGAAGAGTGGGAATGCCTGGAGCCTGTTCAGTGGAATCTGTACAGGGACGTGATGTTAGAGAATTACAGCAACTTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031576:ENSRNOT00000042058:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]