RnoEX0101415 @ rn6
Exon Skipping
Gene
ENSRNOG00000031576 | Zfp455
Description
zinc finger protein 455 [Source:RGD Symbol;Acc:628788]
Coordinates
chr2:86996497-87003519:+
Coord C1 exon
chr2:86996497-86996845
Coord A exon
chr2:87001332-87001460
Coord C2 exon
chr2:87003393-87003519
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTCCGAATACTTTTCCTTAGACC
3' ss Score
6.07
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
CTTGTAAGCCAAATGTTTCTGTCAAAGGCTTGACTCATATCCATACTTCTGTTGTGGTTCTGGGGTCGGAAACCAAGCTCATTACCCATAGTTGTTATCCAGATAGAGCTTTGTCTTCCCACACTCCAAGGCGGGTTACAATCAGCAAATGCGGTAAAGAGAAGACTTGTACCCTGGGTTCCGGAATTTCCTTCGCACAGACTTCTGGGAGATGTAGTCTACACCACTGTGACCGCAAGGAGTCTTCCGGGAAATCCCATTCTGACTTCAGGTCTGTACTCGTGGGTCTTTCTCAAAGTTGGCGGGAAAGCGTGTGCGGCTGTCCATTTCTGTTGTCCGATACATGGAG
Seq A exon
ACCTACACATAAGTGTGCAGCTCTTACTGCTCAAAGCACTTCTAGCTGCCGCACAGAGAGCATCACAGAAAACCAAAACTTACCAAAAATGCAGAGAACTATGGATGATCTTGTGATCTGACCCAATAG
Seq C2 exon
GAAATGCTGTCCTTCTGGGATGTGGCCATTGATTTCTCTCCAGAAGAGTGGGAATGCCTGGAGCCTGTTCAGTGGAATCTGTACAGGGACGTGATGTTAGAGAATTACAGCAACTTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031576_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSRNOT00000042058fB16944
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCCTGGGTTCCGGAATT
R:
TCCAGGCATTCCCACTCTTCT
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]