RnoINT0168623 @ rn6
Intron Retention
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84087540-84089486:+
Coord C1 exon
chrX:84087540-84087677
Coord A exon
chrX:84087678-84089351
Coord C2 exon
chrX:84089352-84089486
Length
1674 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
3' ss Seq
TAATTATTTCCAAAATGTAGGTT
3' ss Score
5.14
Exon sequences
Seq C1 exon
GTGGGACAGAAATTGTCACTGAGAGTGAATACACCAGTGGACATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAAGAAGAAGATGATATCA
Seq A exon
GTAAGATAAAAGGGCACTGTAATGACTTAGAAGAAGCAATAACACAACTTTAAAAACAATTGATAGCAGCCATATATGTACTGAATAACAGCTAAGTTAAAAACAATAAGCTTATTCTTGCAAATATTTAGAAGTATGGGTCCTTTTAGACGTTCTTGAACCAATATATTACTGAGATAAGAATACATAACCATACATTTCAAATAATGTGTTACAAAGAGATGAAGAGTTTATAGGTTTGATGTAATGAAATTCAAAATACATAGAATGCAACTTATATATTAAATATATTATATACATGTATAGTGCACATAAATTCACACAGGCATACAGACAGACAGGCATAAATTTAAAAATGTTTGGATCTGTTAAATTTTGTTTCATTTTAATAATTAACCTCGGAGGTAGAAAGTATTATTCATTTTTTATAAGACAAGTAAATCCTCAGGGAAAATCAATTGCTCAAGACCTTTACAACACTAGACGTGAGAACTTGTCTAACTCTACTGCCAGCGTTTTCTCTACATGGCAGTAAGCACTTCTGTCCTATCTACATTTAGCAGTGAAAGGGCTAACTGGTTGATCTATCACTGAAAAAGTTGGGTGGGTAAATATTTTATACAAGCCGTTCTGCTAGGATGGTAATTTATTATGCTGTTCATGGGTAGACCACAGGGTAAAATATCCTACTCAGATTTGCTTTCTTTTGTCATTTTCCATGCTTTTTGTTTATTTTTCTTCAAAACATTTTATTCTTTTCCTACATTGTTGTCATCTCATTATTTAGTCTTGTCTGAGGTTGTATTTGTTTCCTTGCCATCCTGACAAAACACTATTTTATCACACAAGGGCAAGAGGCTCATTTTCACACAATTATCTCGATAGTGCTATATTCTATTTATGCTACACTCTAACAGCTATTCCTCATGTCTTTCTCTAGCAACCACAGAGAGCTGACTGCTGCCTCCCTATCACAGCTGAAACTATCAAAACACTTGCTGTATAGTACTTGAGTAGGGAACACAAACGTTTATTTAAGTAATGGTTAAGTTTGTTTCATCATAAATCTTAAAAATTTTAACTCACTAATTAAATAAGAGGCATGATAGTATATGGGAAACTGAGGTATAGGTTTATCTAATGCCATAATTTGATAGGAACATGGAAAACTTAGACCAGCATCTGTGCTTATTAGAGAGGAGAAACAAGAAGATACCTTTCCTCACTTGTTTTTATACATTTCTTTTATAGTACATAGAAGATACAAGTTTTTGAAATATGGGAAAAGCATAAATTACATTTGATGTTATATTTATGAGTAAATAGAAATATTTTTTCACAAGAGTATATAAATTTTCCTTTTATGTTTAAATATTTTAAACCTCAATACTATTACCTTTAAATATGTTCTTTTTTCTCTTAGTACTATACTTAAAAGTATTGCTTCTTGAAGAGAGTCTACTGATTCTTGAACAACAGCATTTTATATTATATTTGTATGTACATATATATTTATAATCACATATGATTATAATTATTTAAAAAGTTTATTCAATGACTAGTATATTGATTATTAATCACCACACAAATCAACTAAGATGAAATCTTAAAACCTAAAGATTTAAGTTGTTTGATACTTAAGATTATAAACAAGTAATTATTTCCAAAATGTAG
Seq C2 exon
GTTATGCTGAAATATCAGATGAACTGTACATGGAAGTCATTATAGGGGAAGAGGAAGGAAATCTCCTTGAGATTCAGCTTGAGGACTCTGATGTTAATAAAACAGTTTCCCCTGTTGTCTATCCTGCATCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391:ENSRNOT00000046364:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(13.2=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGAGTGAATACACCAGTGGA
R:
TATGATGCAGGATAGACAACAGGG
Band lengths:
254-1928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]