RnoEX0101683 @ rn6
Exon Skipping
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84087540-84090282:+
Coord C1 exon
chrX:84087540-84087677
Coord A exon
chrX:84089352-84089486
Coord C2 exon
chrX:84090238-84090282
Length
135 bp
Sequences
Splice sites
3' ss Seq
TAATTATTTCCAAAATGTAGGTT
3' ss Score
5.14
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTGGGACAGAAATTGTCACTGAGAGTGAATACACCAGTGGACATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAAGAAGAAGATGATATCA
Seq A exon
GTTATGCTGAAATATCAGATGAACTGTACATGGAAGTCATTATAGGGGAAGAGGAAGGAAATCTCCTTGAGATTCAGCTTGAGGACTCTGATGTTAATAAAACAGTTTCCCCTGTTGTCTATCCTGCATCATATG
Seq C2 exon
ATGAAAGACGAGTTTCCCGAAGATATGAAGATTGTCAAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.130 C2=0.125
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(13.2=100)
A:
PF047048=Zfx_Zfy_act=FE(12.9=100)
C2:
PF047048=Zfx_Zfy_act=FE(4.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGAGTGAATACACCAGTGGA
R:
GGCTTGACAATCTTCATATCTTCGG
Band lengths:
162-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]