HsaEX0074247 @ hg19
Exon Skipping
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:13128]
Coordinates
chrX:84520124-84523347:+
Coord C1 exon
chrX:84520124-84520261
Coord A exon
chrX:84522284-84522421
Coord C2 exon
chrX:84523300-84523347
Length
138 bp
Sequences
Splice sites
3' ss Seq
CAATTATTTCTAAAATTTAGGTT
3' ss Score
7.28
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTGGAACAGAAATTGTCACAGAGAGTGAGTACACCAGTGGACATTCAGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAAGAAGAAGATGATATCA
Seq A exon
GTTGCGCTGAAATAGCAGATGAAGTTTACATGGAAGTCATTGTAGGGGAAGAGGAAGGAACTTCTCTCCCTGAGATTCAGCTTGAGGACTCTGATGTTAATAAAACAGTTGTCCCTGTTGTCTGGGCTGCGGCATATG
Seq C2 exon
GAGATGAAAGAAGAGTTTCCCGAAGGTATGAAGATTGTCAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=0.191 C2=0.510
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.1=100)
A:
PF047048=Zfx_Zfy_act=FE(13.1=100)
C2:
PF047048=Zfx_Zfy_act=FE(5.2=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAACAGAAATTGTCACAGAGA
R:
CTGATGCTTGACAATCTTCATACCT
Band lengths:
186-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)