GgaEX7003598 @ galGal4
Exon Skipping
Gene
ENSGALG00000006929 | ZNF6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHJ7]
Coordinates
chr4:8661769-8664838:-
Coord C1 exon
chr4:8664692-8664838
Coord A exon
chr4:8663967-8664104
Coord C2 exon
chr4:8661769-8661912
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATTCTTCTCCTTTAACTCAGGCT
3' ss Score
6.08
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTGGGACAGAAATTGTCACAGAGAGTGATTTTCACAATGGACATTCAGTAGCTGGAGTAATTGAACAAGGAGGTGTTGGTAGAATGCAGCGAGAAAAAATGGTTTACATGGCTGTTAAGGACTCTTCTCAGGAAGATGAAGATATTA
Seq A exon
GCTGTGCTGAAATAGCAGATGAAGTTTACATGGAAGTTATTGTAGGTGAAGAAGAAGCTACATCACTTCCAGACACACAGCTCGAAGAGACTGGTGTGAATAAAACTTTTGTTCCTGTTGCTTGGGCTGCTGCTTACG
Seq C2 exon
GGAATAACTTGGATACACGATTAGAAAACAAAAACGGTAATGCAACACAATACCTGCAGATTTGTGATAGCATTAGCACTAATAGAGTGCTAAAACAAAAAACCAAGAAAAGGAGGAGAGGAGAGGCCAGGCAATGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929-'18-18,'18-13,21-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.213 C2=0.347
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.6=100)
A:
PF047048=Zfx_Zfy_act=FE(13.7=100)
C2:
PF047048=Zfx_Zfy_act=PD(13.7=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAATGGACATTCAGTAGCTGGA
R:
GGCCTCTCCTCTCCTCCTTTT
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]