DreEX0088292 @ danRer10
Exon Skipping
Gene
ENSDARG00000071868 | znf711
Description
zinc finger protein 711 [Source:ZFIN;Acc:ZDB-GENE-081107-49]
Coordinates
chr14:11676116-11677244:-
Coord C1 exon
chr14:11677110-11677244
Coord A exon
chr14:11676675-11676812
Coord C2 exon
chr14:11676116-11676247
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTCACCTGTCCTTAATGTAGACT
3' ss Score
6.45
5' ss Seq
ATGGTCATT
5' ss Score
-0.14
Exon sequences
Seq C1 exon
GCAGCACGGAGGTGGTAGAAGAGAGTGATTTTCCTGGTAGGCACACTGTGATGGAGTCAGTGGGTTCAGGAAGGCTGCCCAGAGAGAAGATGGTCTACATGGCTGTAAAGGATGCCAACCAAGAAGATGATTTAA
Seq A exon
ACTGTTCGGAGATGACTGACCAGGTGTATATGGAGGTCATTGTTGGGGAAGAAGAGGCTCCTGCTATCACAGAAGCTCAGATGGAGGACTCACCAGTTAACAAGACCATTGTTCCTGCAGCCTGGGCAACTGCTTATG
Seq C2 exon
GAAGCAGTCTAGAAAGTAAGAATGGTGCTGCCACTCCCTACCTGCAGATCACTGACAGCATCAGCACAAGCCGAGCACTTAAGCAAAAGATTAAGAAGAGAAGGCGAGGAGAGACACGCCAGTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071868_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=0.362 C2=0.333
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.7=100)
A:
PF047048=Zfx_Zfy_act=FE(15.0=100)
C2:
PF047048=Zfx_Zfy_act=PD(13.7=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGGAGGTGGTAGAAGAGA
R:
GTGTCTCTCCTCGCCTTCTCT
Band lengths:
249-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]