MmuEX0053578 @ mm9
Exon Skipping
Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:109738348-109741757:+
Coord C1 exon
chrX:109738348-109738485
Coord A exon
chrX:109740779-109740913
Coord C2 exon
chrX:109741713-109741757
Length
135 bp
Sequences
Splice sites
3' ss Seq
CAATTATTTCCAAAATTTAGGTA
3' ss Score
6.14
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTGGGACAGAAATTGTCACAGAGAGTGAATACAGCAGTGGCCATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAGGAACAGGATGATATCA
Seq A exon
GTAATGCTGATATATCAAATGAACTGTGCATGGAAGTCATTATAGGGGAAGAGGAAGGAACTCCCCTTGAAATTCCGCTTCAGGACTGTGATGTTAATAAAACAGGTTCCCCTGTTCTCTCTCCTGCATCATATG
Seq C2 exon
ATGAGAGACGAGTTTCTCGAAGGTATGAAGAATGTCAAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.770 A=0.394 C2=0.556
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.1=100)
A:
PF047048=Zfx_Zfy_act=FE(12.9=100)
C2:
PF047048=Zfx_Zfy_act=FE(4.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTGAATACAGCAGTGGCC
R:
TGGTGCTTGACATTCTTCATACCT
Band lengths:
162-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: