MmuINT0179780 @ mm9
Intron Retention
Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:109740779-109741757:+
Coord C1 exon
chrX:109740779-109740913
Coord A exon
chrX:109740914-109741712
Coord C2 exon
chrX:109741713-109741757
Length
799 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
TAACTAGTCCTTTTTTATAGATG
3' ss Score
5.95
Exon sequences
Seq C1 exon
GTAATGCTGATATATCAAATGAACTGTGCATGGAAGTCATTATAGGGGAAGAGGAAGGAACTCCCCTTGAAATTCCGCTTCAGGACTGTGATGTTAATAAAACAGGTTCCCCTGTTCTCTCTCCTGCATCATATG
Seq A exon
GTAGGACACCAGTACTTTTACCTAAGTACATAAAGTATGCATTGACTATGCCTTTGAGCAATTAAATATTCTGTGTTATAGTGCCACGGTGTGTTAGCTAAGTGAATAAAATATTCTGCAGTGAATTGATTGATCACACGTTACTTTTCATGGCTTTTTATCACATATCTTATACTACTAAACCTTGCTTAATGCATTTTTGTTAGAATATATTCTAAATCCTGCCTGTATGAGTGAGCAACATAAAATATTTTATTTTCCTAAACTAGGAGTGACCTTTAAAAAAGTTAATCCTTTCTCTTTTACAAAAATGTATATCAATTGTTGACACACAAATAATAAAGTTGAGGTTCTGGAAGAAAATCAAATTCTTTAGAATGTATTCACTAATTTTTTTAAACCACATTATGTCTTTTGTTAATTTCATTATTTTTATGTAGCTTACACTTTCCAAGCTTCCAATGTACAATGCATTAATTTATTTAAAGTTCTCTCAAAGTTTCTTTCATCAGCAGTTATGCATGTATTTTAACATCTTCATTGCTAAGGATGTTTTGCAGAAACAGCTACTGAGTTTTCACTTAAGATGTAAAACTGTTCTAGATACTACCAATTCTAAGGAGGCATATAATTGTCCCTATTATTAGTGGAGGGGGATTGTTTAATTTTGGGATGCTTTCAATAACAAGTGTATTTTAATGAGAAATTGGTAGCAAAAGTAGAATTTTATAGATTAAAATATAATCTGGTAGTAGTTCTGTAGGCAGTATATCAGTTTATAACTAGTCCTTTTTTATAG
Seq C2 exon
ATGAGAGACGAGTTTCTCGAAGGTATGAAGAATGTCAAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529-Zfp711:NM_177747:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(12.9=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: