DreINT0181636 @ danRer10
Intron Retention
Gene
ENSDARG00000071868 | znf711
Description
zinc finger protein 711 [Source:ZFIN;Acc:ZDB-GENE-081107-49]
Coordinates
chr14:11676675-11677244:-
Coord C1 exon
chr14:11677110-11677244
Coord A exon
chr14:11676813-11677109
Coord C2 exon
chr14:11676675-11676812
Length
297 bp
Sequences
Splice sites
5' ss Seq
TAAGTGCGT
5' ss Score
2.73
3' ss Seq
GTCACCTGTCCTTAATGTAGACT
3' ss Score
6.45
Exon sequences
Seq C1 exon
GCAGCACGGAGGTGGTAGAAGAGAGTGATTTTCCTGGTAGGCACACTGTGATGGAGTCAGTGGGTTCAGGAAGGCTGCCCAGAGAGAAGATGGTCTACATGGCTGTAAAGGATGCCAACCAAGAAGATGATTTAA
Seq A exon
GTGCGTTCTGTAGGACTTTTACACTTCAAATTGTTAAAAATGTGTTATTCTGCTTTTGAAAATGAATTTTCTTCATTATTATTTTATTTAACATTTTTATTTATTTTTTATTGTTGATTTAACAGTAAACAAAGGTTCATTAAATATGTCTTTATACAGGGTTAAAATAGTATTTAGAATGGCGATTAACCCAGGGTTAAGCACAGTGGAAAAAAACCCTCTCCATTTAAGAACAAGTACCAATGCTTATAGCCATTGAAAAGTGTGTTATTTTTTTGTCACCTGTCCTTAATGTAG
Seq C2 exon
ACTGTTCGGAGATGACTGACCAGGTGTATATGGAGGTCATTGTTGGGGAAGAAGAGGCTCCTGCTATCACAGAAGCTCAGATGGAGGACTCACCAGTTAACAAGACCATTGTTCCTGCAGCCTGGGCAACTGCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071868:ENSDART00000106654:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=NA C2=0.362
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.7=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGGAGGTGGTAGAAGAGA
R:
CATAAGCAGTTGCCCAGGCTG
Band lengths:
270-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]