RnoINT0168624 @ rn6
Intron Retention
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84089352-84090282:+
Coord C1 exon
chrX:84089352-84089486
Coord A exon
chrX:84089487-84090237
Coord C2 exon
chrX:84090238-84090282
Length
751 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
TAACTAGTCCTTTTTTATAGATG
3' ss Score
5.95
Exon sequences
Seq C1 exon
GTTATGCTGAAATATCAGATGAACTGTACATGGAAGTCATTATAGGGGAAGAGGAAGGAAATCTCCTTGAGATTCAGCTTGAGGACTCTGATGTTAATAAAACAGTTTCCCCTGTTGTCTATCCTGCATCATATG
Seq A exon
GTAGGACACTAGTATTTTTACCTAAGTATGGAAAGTATGTATTGATATGCCTTTGAGCAATTAAATATTATGTTTTATGATGCCACGATGTTGGCTAATTGAATAAAATACGTTGCAGTGAATTGATTCATCACCAGTTACTTTACATGACTTTTTCACACATCTTATACTATTAAACCGTGCTTAATGCATTTTTGTTAGAATATATTCTAAATCCTACCCGTGTAAGTGAGCAACATAAAATACTTTAGTTTCCTAAAATAGGAGCGACCTTTAAAAATTAATCCTTCCTCCTTTACAAAAATATATTTCAATTGTTGACATACAAATAATAAAATGGAAGTTCTGAAAAAATCAAATGTATGTTAATTCATTCCTTTTTTTATCCCATTATGTCTTTTGTTAATTTCATTATTTTTATATAACTTCCATTTTTTCTGCTTCTAGTGTACAATGCATTATTTTATCTAAAGTTCTCTTGAAGTTTATTTCATTCAGCAGTCATGCATGTTTTGAGCATCTTCATTGCTAAGGCTACACTGCAGAAACTGTTCTCGATATTACCAATTCTAAGGAGGCAGATAACAGTCCCTATTTTCAGTGGAGGGGATTATTTATTTTTTGAAGTTTTCAATAATAAATATATTTTATTGAGAAATTTGTAACAAAAGTAAAATTTTATAGATTAAAATATAATCTGGTAGTAGTTCTGTGGGCAGTATATCAATTTATAACTAGTCCTTTTTTATAG
Seq C2 exon
ATGAAAGACGAGTTTCCCGAAGATATGAAGATTGTCAAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391:ENSRNOT00000046364:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(12.9=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]