HsaINT0188218 @ hg19
Intron Retention
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:13128]
Coordinates
chrX:84520124-84523347:+
Coord C1 exon
chrX:84520124-84520261
Coord A exon
chrX:84520262-84523299
Coord C2 exon
chrX:84523300-84523347
Length
3038 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
3' ss Seq
TTTTTTTTTTTTTTTTTTAGGAG
3' ss Score
12.2
Exon sequences
Seq C1 exon
GTGGAACAGAAATTGTCACAGAGAGTGAGTACACCAGTGGACATTCAGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAAGAAGAAGATGATATCA
Seq A exon
GTAAGAAAATAAGGGCACTGTAGTGACTTATCAGTAGCCATCATGCATTATTTTTAAAAAATCTCAGAGATACAAGCACTGTATAGGAACAAAGTTCAATAAAATAAGCCTGATCCTTTGACCCTTTGCTGTAAATAATTTAAAAGTGAAGGGTCCTTTTGACCATTCATTTGTACATGTATTGTTCAAATCACCAAACATTAAATAATATATCTTAGTATACTATACTAGAAATACAGAGATGAACAACATACAGCTCCTGACATCAGTGAAGCTCAAAAATATGTAATTACTGAGTACCTACTTTCTGTGCGTTACTGAATATGTTGCAAGATACTATCTCATTTAATTCTTACAACTCATATCTGAGGTAGGTGGTATTTTTCCTGTCTTATGGAAGGAAAAAAAAAGATTCAGGGAAAATAATTTATCCAAGATCATTCCAATATTAAGTGTGAAGGGCAGGATTTTAATGGTTATCTAACTCCACTGCCAATGTTCTTTCCACATGGCAGTGGGCACTGTTGGCTTCTCTCTGGATTTAGCAATTGAAGGGCTGATGGTTTGTTCTCCTGTCACTAAAGGGTTATCTTATGTAAGTATTCTTCCAAGCCAAGCTGCCAGGAGTTTGATTTCCTATGCTGTTGATGGTCTCCAAGCAGTTGCTGCTTAAGGTTTTGTGGGGCTAAGTACCACAGGACGATCAAACCTCCTCAGGTTTCCTTTCCTGCCATACCGCAGGTTTCCTTATGAAGACATTTTGCTCTCTGCCTACTTTCTCCTCACCTCAGTATAGGAATGCAGCCCTTTCCTAAGGCTATTCCTGTCTTCTTACTATGCTGAGAAAAACACAATATTGCCTTGCCCTAGAAGGCTAAGAGCCTCCATTTCACTGCATTAACTTGACAATATTGGGCTTTACCTGTGCTGCACTCTGATACCTACTCCAAGTTTCCTTCCCTAGAAGTTGTAGGGTGCTGAATTCCACCCCCAAACAGCTGAAAATATCAAAACAAATGAGTGGAGAAGATTCTGATGGATAGGAAAAGAGTTTAATCAAATAATTTCTATTTGATCTCTAAATTCTTTATTTTTTTATTTATTGGTAAGGAAAGGGGCACAGTAGGAAATGGAAGATTGAGGTTTAAGTTAACTTATGCCAGAATTCTATGGGAATGTGGGAAACTTAGACCAGTGTCTCTTTTTGGTTAATAGAGAGAAGACAAACTTGGGAGAAGAGGGATACTTTTTTCCCATGTTTTTCCCCACATTTCTTCTGTAGTCATCCAGGATCCCAGTATGTGAATCAAAGGAAAAGCAAAAATTCAAGACAATTTTCTATTTAACAAGTTAAATGTAAACAGATTATTTTATATAAAGTATATTGTGGCTCTCTAGGTTTAAATATTTTTTTTTTCTTACCGCAATATTGTTTTGTTCAATGAAGCTCATTTAATGCTTTCTCTCCTCAGTAGAATCTCTTAAAATCTGGCCTATTGAAGAGTGTCCACATATTCTTGATCACTAGCATTATATACATATATAATTTTTATTTTTATTTTAAATTTTTTTCAATTACAAGTATTTTTGGTGATTTTTATTACATGTATAGTACTGCATTTCATTTATAATACAGTATACGAGATAGTATGGACCACTTTCTAGTATTATTTCTATGAGAAATATTTTCTGAGTCCCAAAAGACTGTCAGGCAAATAAATGTATAATGCCTGATAGAATGTAAGATCATTCAGTATATTTCAAGCGCACATGTTTTTATAAAATTTTTAAAAGCCATTTCCATAGAACTTGGTTCTAAGAGGAGAATAAGAGTTTTGGTAAATGATTGTCTCCTAGTGGCACTAGCCTCCAAAAGTGCCTAATATAAATTGAAATTAAATTTATAAATTTTTAAATTAACCAAACTGAAATTTGAAAGTTGAAAGATTTACATTGTTTGGAATTTTTACCCACTTATTAAATATTTGGGGTTATAAACAAGCAATTATTTCTAAAATTTAGGTTGCGCTGAAATAGCAGATGAAGTTTACATGGAAGTCATTGTAGGGGAAGAGGAAGGAACTTCTCTCCCTGAGATTCAGCTTGAGGACTCTGATGTTAATAAAACAGTTGTCCCTGTTGTCTGGGCTGCGGCATATGGTAGGATACTGGCATTTTTTCACCTGATAAGTACATAATATGTATTTACTCAGCCTTTAGGCCATTAAATAAGCTTTGTGAATGCCACCATGAATTGGCTAATATAATAAAATGTTTTACACTGTGGACTGATTCATCTCTAGTTACTTTAGATGATTTTTCTACCACATACCTTGTACTATTTAAAATGAACCTTGCTTAATGCATTATGTTTTTCAGTATGATCTATTTTAAATCCTACCTGTATAAGTGAGTGCCATAAAAAATTTTATTTTTCTAAAATAGGAATATCCTTTGAAAATCGATCCTTCCTCTTTTGGAAAAACTTATTTCATTTATTAACTCTACAGATGATAAAGTTTTGGGGTTTTGAAAAAGAAACAGAAACCCAGGTATGCTCTTTTAGAAAGCATATAATGAAAGGTAAATTTATCAACTTATTTTTCCCTTTCAGTCTTATTTTATTTCATTCCTATGTAACGTACAAGATGGTCCAGGTATACTCTTTACTTTGAAAAATTTTGATGTTCAAATGCATTAATTTATCTAAACTTGGTTCTTCCAAAGGTTCATTCATTCAGTTATTTATTGAGCATCTTCAAAGTTAGGGGTACACTGCAGAAATATCTACCCAGTTTTCATTTAAAAAGTAAAATTGTTCTAGATGTTAACAATTCCAAGGATGCTGAACAGCAGCCCTTATTTTCAGTATGTGACATTATCTAACCTATAGGAGTGGAAGAACACAACAATTTTTTTTAACCCAAGGAATGGTGGGCAAAGTAAGATTTTGTAGATTAAGATGTGATCCACTAGTAGTCATTATAATTAGCATATCAGTTTGTAATTGGTCTTTTTTTTTTTTTTTTTTTTTTTAG
Seq C2 exon
GAGATGAAAGAAGAGTTTCCCGAAGGTATGAAGATTGTCAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180-ZNF711:NM_021998:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=NA C2=0.510
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.1=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(5.2=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)