RnoINT0168637 @ rn6
Intron Retention
Gene
ENSRNOG00000015598 | Zfp772
Description
zinc finger protein 772 [Source:RGD Symbol;Acc:1308782]
Coordinates
chr1:69739285-69741278:-
Coord C1 exon
chr1:69741240-69741278
Coord A exon
chr1:69739372-69741239
Coord C2 exon
chr1:69739285-69739371
Length
1868 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTTGTGTCATTGTACTTTAGGAC
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTTTCCCAGTACTCAGTGAAACCTGCCAACCAGGAAGAG
Seq A exon
GTAAGTGGAGGGTGCCCTGGAATCACACTCCTCACTTTCCACATAAGTGACCTCTGGGACTATGGTGTCCTGAAACTCTGTGCTTGGGATTCTCTCTGTCCTTCCATTGGGTTTCCCTGGCACATGCTCAGAATGAAAGGTCCCCACATCCATAGCAGGGATTACATGGCCGCCAGGTTTCCCTTCATGGTAACCATTGGCTGAAGATTCAGAGGTCTTAAAGGTCCAGTGATGACCTTACAGGATGCCTGGAAGCGAGATGGGTTGAGAATGCTGAGAAATGCTCGGGTGTGCATGAGGTCTGCCGGCTTTAGCAGAAGGTAGGAGTTGGGTAGCACAGCAGCTGAGGGCTGAGCCTGCGTACTGAGATGGAAATGGAAGCTCAGTGTGAAGACTGATGTGTGTGTTTCGATGTCACGTGTAGATGGCTTCCTGGTCTTCGTGCCAGGGACAGAGTGGACAACAGTGACCCAGATGTGTACACANNCNCCGGTCTTTGTGAGACAGGTGATTGGGAGGAGCCCAGGTGAATTCCCAGATTGGAAGGATTGACCCCAGCTGTGGTGGTTTCAATGAGCCTGCCCTACAGAGCAGAGACTTGAATACTTGGTCCCCATTGGTGGAAAACTTTGGAGATAATAATGAGGTGTGGCCTTGTTGGAGGAGGTGTGTCACTGGGGTGGGCTTGTAGTCTTCAAAAGCTCTTGCCATTCCCAGTTAACTCTCTCTACATGGTACCTATGGATCAGGATGTAAGTTCTCAGCCACTGCTTCAGTGCTGTGTGTGCCTGTAGCCATTCTTCCTGCCATGAAGGTTACAGACTCACCCTCTGAAGTGTAAGCCCCAATAAACTCGGCTGTTCTATAAGTTGCCTTGGTCATGGGGTCATGGCGTCTCTTCACAGTAATAGAAAAATAACTAAGCTACCATGTCAACTAACCTGTTGTTGCTTAGTGCTAAGCATAGTGGTCAGTGGGACCTCGAGGATAGGCTAGATTATCAATAGGTTCATAGCCTGGTACCTTCTGAGGTAGAGAGCTAAGTGGGAATGACTTAAGGATACCAAGAGTCCCTGACAAGGAGGCTACAAATAAATTCAAGTTTCCCCATGTGCAGGGCTGTGTTTCCTTTGAGGATGTGGCTGTTTACTTCTCCTGGGAGGAATGGACACTGCTCAATGACTCTCAAAGGCTTCTGTACCAGACGGTGATGACAGAGATCTTAGCACTCATGTCCTCTCTCGGTAAGACCCTGCCATTCTGACAGAGCATGTCTAGGTAGGCTTTCCTTTCTTTCTAGAGAGCTGTATCCTTCTCAAAGCTGGCTTATGAACACCCAGTCTTTCCCCCACTGTCTTGGAGTATAAAATACAGGTTAAAAACCAAGGTTTGTTTCACAATGGCTCTGTCTTAACTGTAGCAAGGGCACACAGAAATCAATTTGGAATTAGGATTTTTTGGGTGTAGTTTGAGACTGGGTCTACCTATAGAGTCTTAGATATGTGCTAGGACTTGCTATGTAGACCTGGCTCTCCTTTGACTTGCCGAGATCTTCCTACTCTGTCTTTTTAGTACTGTGATTAGTGGATTGCACAACCACACCTGGCCTGGGGTCAGGAGTCTTAACACTGATGGCTTCTCTGCAACTTGATGATGCTATACATTTTTGGCATCTTTGTGACTCAGGTACTTCTAGATGATATGGCTTGTGTCTGAATGTGGCAGGAATTGTGGCACCGATGAGCTCATTTTTGATTTTTGTAAGACACCCTTGCCAGGATCATTCTCATTAGGCCTCTTAGGGATTGTATGGTTGCATTATTCAGTCTTAGTACGAAATTCTCATTTCTTGTGTCATTGTACTTTAG
Seq C2 exon
GACTTGTACCTTCCGGGATCCATGACATCACTCAGTTGGAGTCTTGGGGAGAGCCCTCTGTGCCTGCATTGAGATTCCTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015598:ENSRNOT00000030259:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]