RnoINT0168702 @ rn6
Intron Retention
Gene
ENSRNOG00000029043 | Zfp84
Description
zinc finger protein 84 [Source:RGD Symbol;Acc:1309815]
Coordinates
chr1:87697005-87702804:+
Coord C1 exon
chr1:87697005-87697095
Coord A exon
chr1:87697096-87702729
Coord C2 exon
chr1:87702730-87702804
Length
5634 bp
Sequences
Splice sites
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
3' ss Seq
CCTGTGTGCTGTCTTCTCAGGAG
3' ss Score
9.39
Exon sequences
Seq C1 exon
AAGTTGGAGCCGCAGACCAGAATGTAGGATCCCAGCGTCTGAGACCCACCTAGCAGTGGCAGTTTGACCAAGAGGAAGCCTGCCTCGTCCT
Seq A exon
GTAGGTGACAGAGTCCTCAATGACAGCCCTGAGTGTGTGTGAGAGAGAGCATGGGGAGATTAGATTGTGTGAGCGGCTGGATCTGGGAGGAGTTGAACCGCAGAGAAACTGCGAGGAAAGGAAAATGAGCCTGAGCGAGAGTTGGGGTCGAGCTGTGGCGCTTTGTGAGTAGAGCGAGCTGTTGTGGGGAGGGGACATTGTACGTGGATCAAATGGTTCTTGGGGACTGTGTCTCGACTGAATGGATCACAGTACAGGAGTGGCGAGATTGTAGAGATATCTGAAGTCTCCTAAATCTCATTTTCTTTTCAAATTACGACTAGTAAGTGTGATCTTCAGGAGTGTCTGCGTTACGGGAGGGAAAAGGTAAAGCTAATAATAACTAGCATTTTTACTTGTCTGTAAGTTCATTGTGCGGTGTAGGCAATCTACAGGCAAAGGCTTTTTTTTTTTTTTTTTAACACAGTGTTTTGTCTGTCCGGGTGGTTTTTTGGGTGGGTAGGTGGGAGGGTTATTAACGCCCAGGGTCCTCCAAGCAGACATCTTCCCTTCTTTAGAGAGTTCTTGAGAAGACATAGGTGGGGTTTGGTTTTGAGGCTGGCTTGCAATTCTCTTTATAACCAAGGTTGACCTGAACTCCAGGTTCTGTTACCTCCCCTTCTCCAGTAGTTTCTGTTGTCTTGTTGTTTAGACAGGATCTTGCTATTTAGCCCTGGTCACCCCTCCGGAGGCAATCCTCCTGACTGAGATAACAGGTTTGAACCACTGTGTCCTGCTCCAGAATGGGATTACGTGTATTACAGAGAGCAGCCTCACCACGATTAAAACAAACTGCACACAGTACTGAAGAACCACTGGGGCCCAGCCACAACGGTGTGTGTCCAGATCATCCAGGTTTAGAAAGTAAATGTCCTCTCGTTTCCTTATCTGAAGTATTTAGAAACTTTGGTGCCATGAGCCTTCCCCCTTCCCTTTCTCTTTTTGAGACGGGGCCTCTCTATGTAGCCCTGGCAAGCCTAGAACTTGCTATGCAAATCCATTGAACTCAGGGATTCATCTTCCAGCGCTGGGATTACAGGTTTGGGCCACCATGCATGATATATATATATGCATGCCATATATATGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACATCATTAAAGACCCAAGCTCAAGCACAGTTGTCAAGTGGTGGTTTTTGTTTGATTTTGAGATAGGCTGTAGCCTCTGCTGGTCTCAAACAGGATATGTGTCAGATCAGAGTCTAGGGCTGTACTGGATCCTCCCAGCCCCACATTCCAAGTGCTAGCTAGAGCGATAGGTGATCACCCTCACACCCTGCTGGTGAGTTGGTATTTGAATTAAAATTCAAATCTTGCATCATCCTCTCTCAGGTAGATTATAAGTCACTAAACTGGATGCAACCTAGTTGAACAAGAGTCTGGTGGGTGGACAGAACCGTGAAGGACATTCTTAGCCCAGTAGCTGAGTGAGAACCATTTACGGCACAGATGTCCACTGAGGGACTGACCCCATTGAAGTGCCTTCAAGATGTCCTCGTAAGCCCTGCTCTTAAGTTTTAATCGATGTGAACCATCCTCCTCTATTGGGACTTAAGCAAGTAAACAGACGGACAGACTGGTATCACTATACCAAAGATCAATAACGGAACCACGAGCAGGCGTCTCAACACATGCGTTAAGGGGAACTGAAGGGGACGGAGAGATGGTTCAGCAGTTAACAACACTTGCTACTCTTGGAGAGAAACTGGCTTTGAATCCCACTACCCTCATGGTGGCTCACAACTGGCTGCAACCCCAGCTTCAGGGAATCTGACACCCTGCTCATTGGCAAAACACCCAAACACATTTAAAAAAAAAGAAAAAGAAAAAAGCATTTGGAGGATGGGATGAAGGTATTTCTGTTTGTTTGAGAGTGGAAGAGGCTAAACCCGAGTTCGAGGTAGGATTTCCAGGCAGGACACAGCTCAGGACCAGGCACCAACTCAAACATCTTTCATGGAAAAGCAGGCAGGTGTGCTACTGTGATAGGAGGTGGTGAGTGGTTCAGCCAGTTTGTTGTTGGAGTGTAGACTGTACAAACTCACCACTAGTGTGATGCTGTTTTACAACCCATGTGTCTTGTTATCTTTCCGAGGCCAGTTTCTCTGGCTGCCCAGGCAGTGGACTACATTTCCCAGGAGTCATCCCACCCAAGGATAGTGCTGGTCCAAAGATGGCTAGAGGCATCGTTCGCATAGCTGAGGAAGAGTAGTGTGTAGGTCTCAATATTGGTCATCTCAACGTATCCTAAAATTCCTGAAGCTCTTGTAAACAGATGCTAGCGTTGTGTGTGGGAAAGGACTGTGTCGCTGGAAGTAATGGAGTTTAAAACCAGGGCCTTTAAATTGACAGTTGCTGTGTAGTCTTTTGTTAAAGAGAATACAGAGACGGACTACATTTCCCAGGGTGCACTGTGACCAAGCGACTTCCGGTGGTTCAACCCAATTGGCTTCAAGCTTGAAGCCCTAGGAAGGTCTAGAATCAGTGGGGCAGAGTGAGTGTCAATTTAAGGCTTGGAATCAGAATGGTCATGAAAGCTGAGGCCAGGGGTGAACGGCTCTCCTGCGGAGCGCGGAGTTCTGAAGAGAATGTGGTGCCGTTAGTACTTGAGATTAATGTGGGAGCTGTGGTCAATCACCTTACCCTGGGTGTGTGTTCCGAAAAGTGATGGTCACAGTCAGTGGACGGTTTATGTGCGCCTGTATGTACACGACCGTGTACACGACAGAGCAGCTGCCCTGGCACACAAAGAATGAACGTTGTGTTTAATAATAGACACTGTACTTTCTGAAAGCGGGCGTGGAGCGGAAGGACGTGCTCTCCCGTCTTGGTGAGTGAGAGGGCAGAAACACAAAATTGAACGATAGCTTGGCTAGATATACAGTCATTGATTCTCTCATCTCTTTTCCCACAAATATACAAGCCATAAATTTTCAGGGTGCAAAAGTCTAATAAAAACTTGAATATCCTCTCAGAGGTAGTTGACCTTTATAGCATAACTCTTGGTGCGTTTTAAATTTTTTAATAGCTTTATTTTATGTGCTTGAGTGTTTGCCCGTGTATTTGTATGTACACCACATGTGTGCCTGGTTCCCTGGAGAGGTCAGAAGAGAGCACTGAAGCCCCTGGAACTGGAATGCTGGATGCTCCTGTGTTGGGGATGAAGCCAGGGTCTTCTGCATGAGCAACAGTGCTCGTAACCCCGAGGCATCTCCCTAGCCCATCCACTCATCATGGGTTTTTATCTAATGTTTTTTAGGTGATGTTTTGTGCCATTTCCCCCACACCATTGTATTTCTTTAGGCAGGTAGTATCAGTAAACACTCACGGTCTCACAGTGTGTCTGTTTAGTCACCTTGAATCCAAACCATGTATCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCTTCAAACTCAGAGATCAGCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTTCACCACCACCCACTGGCCCTTATATTGGGGATATAGGGGGGAGGCACGGGGTCTCATTAGCCCTAGTCTCTCTAGCCCTGGCTGTCCTAGAATTTACAGTGATCCTGTGAACTCCCTGCCTGCTTTTCCTGTCATGTCTGTCAGAATCTTGTGTTCAGTGTTTGCCCACTTCTTACAGAGTGAGGATTTCTCGTTGCTGGACTGTCCACATGGGTTCTGTTTATCTCTGATTCCTCTACATGGCTTCAGGAGGAACTCGGGATTAGAACAGTTCTTCCTTCAAACTGTGTAATAGTTGCTCTCAAGTCCTCCCTCTCTCCTCCCAAACACAAAGTGTGTTTCATATAACAATTGTTCAGGAACCGTCACTTGACTCGCAAAGACCCATCACAACCATGGAGCTCTTTGTGTCCTGGGGAAATGGATAGAGTATGCTTTACACGGAATTTACATGAGCCTCACTGTGCCCTGCTCTGCTCTCTGTGACAGCTTCCTCCTTCCATCCACACCCCCCCCACATATACATACACACTTTTTTTTTTTTTTTGAGACAGGGTCTTTTTTTTTTTTTTCTTTTCTTTTTTTTCAGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGGCAATTGAAACAGGGTCTTACTATGTAGCTCCAGCTGGCCAGGAACTTGTGTTGTAGACCAGGCTAGCCTCAAACTCAAAGATCTTCCTGCCTCTCATTCCTCAGAGATAAGATTGAAGGCACTGACCACTATGTCTATCCTTTTTTGGTTGGTTGGTTAGTTTTTAGTCTGTTTGTTTGTTTGTTTTAATTTTTCTGTGTGGTTTGGTCTATTCCATGCATGCAGTGCCCGTGGAGAGAATGACTGATCCCCCAAAGCTGGAGTTACAGATGCTTGTGAGCCAACATGTGGGTGCTCGGAATTGAACCCAGGTCCTCTGGAAGGGCAGCCTGAACTCTTAACTATTGAGTCACATCTTTAGCCCTTTCCATGTCTCTACTTAAGTTTAAACCTTATTCTTAAAATGTAAAGTTAGAGACCGGAGAGATGACTCCACAGTTAGGAGGACCCACTGCTCTTCAGGAGGACCTTTTTTTTAGTTTCCAGAACCCACGTGACAGCTCACAACCATCTCTGATTCCGGTCCCAAGGGAATCTGACACCCTCTCCTATCCTCAGGGAGCACCAGGGACACGTGTGGTACACAGGCAAATACTCATTCACATGAAGTAAAAGTAAAGTTTTTAAAAAGCAGTTACTTCTCTCCGAAGAGGCGAGGCCTCCGCCCAGGCTGAGAGGCACACGTGGTAGGACTGTGCCAAGGTTGGAGTTTCGGGGGCTGGCAGTGATGCTGGACTATGTGCAGGTGCCCTGTGAGCTATGTGGCCTGTGCTCATGCTTGTCTCACTGATGGCCTGGCGAGGTTCTTCAGGCTCGTTATAGCCTCAAAGCTGTCTCCAGTTTTCTAGCATGACCCTTTGTAGATGGTCTAGATGGAAATGACCCAGTAGGTGCCGTAGAGTTTGTTAGACATGGGAAGAATAAGGAGGCCCTGTTCTACACATACAGAGGAGTCCCACCAGCTCCTGTGGACACCCACAAGGGAGAGTTCTGTTTCCTTTGGAAATGTCTACGCTAGTTTTGTAGAGCTTTCAGAGGCATTTAGACTAAATGAGAATAACCTTGTCTCATACCCTGACCTCAGGAACGATTTTGTTTGTTTTGTTTTGTTTTTCAAGACAGGGTTTTTCTGAGTAGCCCTGGCTGTCTTGGAACTCAGTCTGTAAAGCAGGCTGGCCTCGGACTCAGAGATCTGCCTGCCTCTGCTTCCTGAGCGCTGGGATTAAACATGTGTGCCAGCACCTGGCTATAGAATGATTTTTGCCATGACTGATTAGATTACAACACCATCCTGCTTCACTTGGGGGTTCTCTTGACTTTTGGCGGGGTGTCATTTCACACGCTCCCTCTGGCCTTCCTCCAAGGAAGAAAATGGCCTTTTTACTTGCCCTCTGAAATGGCCTGTGGAAAGCCAGGCATCTCATGATTCTCTTCCCTGTGTGCTGTCTTCTCAG
Seq C2 exon
GAGCTGGCCTCATCAACATAGGAATCAAGAAGAGGACTGACTGGTCACTTTTAGGAGTTTCAAATCATGGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029043:ENSRNOT00000028158:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]