RnoINT0168703 @ rn6
Intron Retention
Gene
ENSRNOG00000029043 | Zfp84
Description
zinc finger protein 84 [Source:RGD Symbol;Acc:1309815]
Coordinates
chr1:87702730-87704939:+
Coord C1 exon
chr1:87702730-87702804
Coord A exon
chr1:87702805-87704420
Coord C2 exon
chr1:87704421-87704939
Length
1616 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTGGGTTTGTCCCGCGGCAGGTA
3' ss Score
6.35
Exon sequences
Seq C1 exon
GAGCTGGCCTCATCAACATAGGAATCAAGAAGAGGACTGACTGGTCACTTTTAGGAGTTTCAAATCATGGCTCAT
Seq A exon
GTGAGTTCACATTGTCTCAACAAAAACTATTTCTCCTCACAAGAATGTCTTTGTCTCTAATTCTGCAAGATCAGTGGTGCCATGGGGCAGTCTAGTACTTTCTGGACATGGTGTTCTTTCTTCTGTTAATAGACCCTTATCTCTCCCACAGGGCAGTCCTGAGGTTTTGTTTGTTTTTGTTTTTGTTTTTTTTTGTTTGTTTGTTTGTTTGGGTTTTTTTTTTTTGGTTTTTTTTTTTTTGTTTTTGTTTGTATGTTTTTTACTTATTTTACTTATATCCCACTCAGTGCCCGGCTACCAGTCACCCCCTCCCATTATCCTTCCCCCATCCCCCAAGCCCTCCCCTGAGCAGGTGGGGCCCCCTGAGTATCCCTCCACCCCACCCCGGCACTTCAAGTCTCTGCAAGGCTAGGAGCTTCCTCTCCCACTGAGGCCAGACAAGGCAACCCAGCTAGAAGAACATCCCACAGACAGGCAGCAGCTTTTGGGATAGCTCCCTGCTCCAGTTGTTCAGGACCCACGTGAAGGTTAAGTTGCACATCTGCTACACGTGTGCAGGGAGACCTAGGCCCAGCCTGTGTATGTTCTTTGGTTGGTGGTTCAGACACTGAGAGCCCCAAGGGTCCAGGTTAGTTGACTCTGTTGGTCTTCCTGTGGAGTTCCTATCTAATCAGGAGGACATCATGTCTGTGGAGGGCATCCTAGACCGTCATGTCAGACCCATAGGCGGGACGATGGCGACCGATGGCAAGAAGGTTTTCATGTTCTGTCTGTACTGACTGGAGCATTTTAGTCAGCCAGGATGAGACTCGGTGCAGTTCTGGGCCTGCTCCAGTATATGTCTCTTTCCTATGCATTCAGAGGAAATGGCAGGAACCCTGAGTGTACGGGAACCTGGGAATTAGCAAGAAGTTAGCTGATTGACAGTTGCTTCCACAGAGCAACACGGTTCAGCTCAGAAACAAAGAAAACAAAACAAAAACCTAGTATCTATTTTGGGAATGCATCTCTAAAGACTTCTTTGAATCTAAACCAATGGAAAATCGGCCAGAAAGTACCCACCACTAAAAAGAACAAACATCCACAAAATGACCAGATTTACTCATGGTTTAGTACATCTGGAGTTAGCGACTTCCAACAGGTGTCGTCTCTCCAGGATGTCTTTTCTCCGATGTTCCTTCCGTGAAGCTGATAAGGATGTTGTGACCAAGCCATAGTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTGTTAGTGCATATGTGCGTCCGCTTCTGTAAATAACATGATGTGGGTTGGTTTGGGAGCTGGCGGAGGCTAGAAGCGGATGTCAGATCCCCTGGAGCTCTGGGCGGGATGGGCGCCAAGGATGGGTACTCGTAACTCAGTTCAAGGCCTCTAGAAGAGCAGTAAGCACGGAACCACTGAGCCGTCCCCCCAGGCCCCAGAGCAGTAGTCTTTCTGAGCCTGTGGGCCCTCGACTCCGTTTGTCACACTTGGTCCCGAGCCATAGCTGCCAGCTCTACCTACTGTTCCCTGCCCTCCCTTGGCCATCTTTTGCCTTCCAGCGGAATCATTTCTTAACCTTCACCATTAACACTGGGTTTGTCCCGCGGCAG
Seq C2 exon
GTAATGACGTTCAGAGATGTGGCCGTAGACTTCTCTCCCGAGGAGTGGGCGTGTCTGAGCCTGGAACAGAGGAGTCTATACAGAGACGTGATGCTGGAGAACTACAGCCACCTCGTCTCCGTGGGTAAGACTCGACCCTAGACATTCCGGGCTTCCTTATTGGCAGCCACTGACTTTCTTTTTTATAAGAAATGTCAGGGGGTTTTCTGACCTGCGTTTATTCTGGAAAACGGCCCGTGTTTTCTGCAGAGATGGTGTCGTCACTGGGGAAGCCCGTGTTCACCGTCCTCCCAGAATGCGTTGTGCTTTTTCTTTGTCCTTCCTGTCCTTGCTGCACTTCCTTTGTTACCAGGGCACCAGCTCAAACTTTTTGGCTTCTCTTCCGTGTGGTCACTACCTGCCTATATTTTATCTTACACGCAGGACTTTGCATTTATCAACCGCATGTGTTCCCTGTGTTGGAAAAAGAACAAGATGCCTGCGTGGATTTGAGCAATGAGACCAGCAGATTTCTCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029043:ENSRNOT00000028158:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGCCTCATCAACATAGG
R:
CCCAGTGACGACACCATCTCT
Band lengths:
342-1958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]