HsaINT0188414 @ hg19
Intron Retention
Gene
ENSG00000197863 | ZNF790
Description
zinc finger protein 790 [Source:HGNC Symbol;Acc:33114]
Coordinates
chr19:37314569-37316594:-
Coord C1 exon
chr19:37316513-37316594
Coord A exon
chr19:37314693-37316512
Coord C2 exon
chr19:37314569-37314692
Length
1820 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GGAATTATTCTTTCCAACAGTTG
3' ss Score
6.31
Exon sequences
Seq C1 exon
CTCTGCTTTCCCAGCACGCTGCCTCACCAAGAAAGAATCCAGAGAAGGACTGGTGGACTTGGAATGTTAAGTCATGGCCCAT
Seq A exon
GTGAGTTGGAATTGCCTCTCTCCAAAAATATAACCCATTTATATCAAATCATGTGAATATTTTTATTGCTTATCCTTAAACTGCTTACCTGAATCACTATTGAGTGTCATAAGTAATGACTGTGAAACAGTCCAATGCTTTCCCTAGATATCCCTCTTTTCTCCAACCAGTATGACCAAATCTATCCACCAGGGCTTTCAGTTATCTCCTGTGTCCCAATCTGGCAGAGCACTGAAGAAGAGAAATACATTTCCTTAAGGGGAACAGTAAAGACTTTTCATTTCAAACCTGTGGCTTAACAAGAGGGGATAGAATAATTAAAGGGGACATACTACATAAAGGCTTTTATTTACTCTGTAGAATGGGATGTTTCATTTAATCAAGATGGGAGTTGGTGTTGGTTGGGATTCATTTAGGTATGTGGCACTTTGTGATGCTTTCCTTAGCAGATATGATGGGAGGTTGAGTTCAAAGAGATCTGGGATTTTCCAGGAAATTAATGAAAGGTTAATATCATTAACAATCCAGGGCTAGTTATTCCAGGCTGGTATAGCCTCTCAGTGGTATCGACAAAAAACTCATCTGATGACTTTCACAGTAATCACTTATGACACTGAATTTGCTGATTGTCAGCTGCTTAACAAAGTCTGGAGATTCTACACATTTTCCACAGAAAATAATATTCAGCCAGGGAGTGTATCTCTTGAGAATTCTCTCAGTTTAAACTAACAGATAATTCAACTAAAAGTAGTAGCTTAAGCAAAGGACAGTTACCTGGGCCAAAGGCTCTGTATGCACAAGTCTGTTTGTGCCCAGTAAAGACTGCTTACAACTAACAAAACCTCCAACTTTTCTCACATAATAAATCTGGGGCTAGTTCTTCCAGGCTGGTGTAGCCTCTCAGTGGTATCAACAAAAAACTCCTATGATGTCTGTTCTGGGCTACCATTCTGATGTTTTGGTATTTGTGATTTGAAGATCATAAAGATGTGGTAACTGAGCAACAGGAGTTTTTACCGGGTGCAGTGGCTCATTAAGACTTTGGGAGGCCAAGGTGGGTGGATCACTTGAGGTCAGGAATTTGAGACCAGCCTGGCCAACATTGCGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCAGTGGTGCACACACGTAACCCCAGCTGTTAGGGTGGCTGGGGCACAAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGATTGCACCACTGCACTCCGGTCTGGGTGACAGAGCAACACTCTGTCTCGTAAAAGAACAAAAAAAAGGAGCATGTAGGCTGGGTGTCGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACAAGGTCAGGAGATCAAAACCATCCTGACTAACACGGAGAAACCCCGTCTCTACTAAAAAATACAAAAAATTTGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGATCAGAGATTGCACCACCGCACTCCAGCCTGGGCGACAGAGCGAGACTCTTGTCTCAAAAAAAAAAAAAAAAAAAAAGAGCATGTAGACACTTGGCTTTTGTCACCCTTATTCCCATGTCATTTCCCCTGAAACCACAGGCAGCCAACTCCAGTTTTTCGCCCAATATATGCCCCACTCCCTGCAGTGCCCCTTTCCAGCCTTTCCCCTTTCATCTATAGGGATTATAATTATTTTTAAAAATTTCACCATTAATACTTGGAATTATTCTTTCCAACAG
Seq C2 exon
TTGATGATGTTCAGGGATGTGGCTGTAGATTTCTCTCAGGAGGAGTGGGAGTGCCTGGACCTGGAACAGAGGGATTTATATAGAGATGTGATGTTGGAGAACTACAGCAACATGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197863-ZNF790:NM_206894:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCCAGCACGCTGCC
R:
CCAGTGAGACCATGTTGCTGT
Band lengths:
201-2021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)