RnoINT0168707 @ rn6
Intron Retention
Gene
ENSRNOG00000020356 | Zfp846
Description
zinc finger protein 846 [Source:RGD Symbol;Acc:1564241]
Coordinates
chr8:21611319-21612106:+
Coord C1 exon
chr8:21611319-21611351
Coord A exon
chr8:21611352-21611979
Coord C2 exon
chr8:21611980-21612106
Length
628 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGTGTGTGTGTGTGACTTAGGTC
3' ss Score
9.64
Exon sequences
Seq C1 exon
ATGGTGGCTGATTGCCTGACAAATTGTTACCAG
Seq A exon
GTATGAACTGCGTCTCCTTAGTGACGCACTTGCCTCTGCCTTGTAGATACACCTTCAGGACAGGCTCGATGTCCACAGCTTCTAAAACAAGTAGCAGCCCCTCAGGAACTCAGTACCCAGCCGGACTTCTGAGAGTGGGACCTCTGATATGGTTGAGGCATTGCCAGAAAATCATCCCAGGATTTCCGTAATCCTAATCTCGATACTCTTAATGTCAAAGGCACATGAATTCTGTCCAGTTCCGTCCTGTTGTTCTGACAGATGGTAAGGAAGACCTAGTGTTCTTGCAGTGTTCATCTGTTACTGTTGAGACAGTGTATGCAGCTTGGAAGTATATGTCAAAACACTGAGGGAGGGCTCCCAGCCTGGCTCTAACAAGGTCTGCTCACCTGTCAGAAGGGTTATTAGTAGTAAATGATGGAGCAGATTGACAAGTTGAGTGTAGATGGGGTTAGGGGGACCTCTCAGCTCTGGGGCAGTCACTGGAAGCTCTCAGATTTCTGTATGGGTATTGGTCCTCACCTCTTAAACTGTAGAGAACATTGGTGTGTATGACATTGTTACTCAAACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTTAG
Seq C2 exon
GTCTCAGTAACTTTTGATGATGTGGCTGTGGACTTCACCCAAGAAGAATGGATTTTATTGGATCAAGCTCACAGAGACCTCTACAGAGAGGTGATGCTGGAGAATTACCAGAACCTGGCCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020356:ENSRNOT00000068461:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]