RnoINT0168708 @ rn6
Intron Retention
Gene
ENSRNOG00000020356 | Zfp846
Description
zinc finger protein 846 [Source:RGD Symbol;Acc:1564241]
Coordinates
chr8:21611980-21614466:+
Coord C1 exon
chr8:21611980-21612106
Coord A exon
chr8:21612107-21614394
Coord C2 exon
chr8:21614395-21614466
Length
2288 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TATACTTTGCCATGGATAAGGAT
3' ss Score
0.3
Exon sequences
Seq C1 exon
GTCTCAGTAACTTTTGATGATGTGGCTGTGGACTTCACCCAAGAAGAATGGATTTTATTGGATCAAGCTCACAGAGACCTCTACAGAGAGGTGATGCTGGAGAATTACCAGAACCTGGCCTCAGCAG
Seq A exon
GTAGGACTGCCACTACTCCTTATGGCTTCTGAGGGAGGAGAGGGATGGGATATTCTGGTATGCTGAGGGAATCAAAATACAAGTAAGAGGCACACAGACTTTGTCCTAATCCCATAACCCGTTTATGGAAAGTTCAAGAGATTCAAGATTTCCAGTGGATACCTAAACGTAGAAAGGACTGAACTATATACACAGTAGTAACTTTCTGAGTTACAACAAAACCTGCATGAATTCCTTTTTCATGATTTCACAGATTGGAGGTTTGTTTGTTTGTATTTTGGGATACAAAATCCAATCATAGTTATGGTTGACCTTGAATTCCCAATCCTCCTGTCCCCACCTCCCAAGTGCTGGGATTAAAGACATATACTACAATGTCTGGCTGGAGGCTGCTTGAGAGGGGAGATTAGCACTGGACTGGAGAAGTGGCCCAGCAATGGAGAGCACTTGCTGGTCATGCAAAGGACCCGGGCTTGGTTCCCTGGTCCAGGTGTGGCAGCTCGTAACTGCCTGTCATTCTGGTTGGAGAGAATGGCTCCCTCTCCTGGTCTCCGAGGCACTGTGTGCACATAGTACACATATCCATGAAGGCAAACACTCAAATAAGAAATGAAACGTCTCACATAAAATATCAAACAAAGAGAAAGAAAGAAATGAAACGTCTAAAAGTAGAGGTTAGCAACCTCAGCCTATAGGTTTCCCTCCCACGCCTCTCCTTATTGTCTAGAACTATCAACTTTTTGCTAAGTGAAGCACTTTATGACTTCTCTTTCCATATCTAACTTGCTGTCAGGACTACCCTGTTTGGGGCCATTAGTAACTGAGGGCAATATGAGCACACCTGTTGCCACTTTGGTTTTGTTTTGAGACAGGGTCTCTTATGTAGCCATAGCTTACGTACACATAACTCATTGTATAGATCAAGCTCCCCGAGTTCCCTGAAATCTGCTTCCCACATGCAAATGCTGGGATTAAAGGCTTTTGCCACCATGCCTGGCAAGTCTTGTGTATTGCGGCAAGCTGAGATGTAAGGGACCAGCGAGCAGGCAGCACGGCTAAGCCGGACGCGCAAAGGATGGTCAGCACCCAGGGAAGAGCAAAGGGTAGTGTGAGAGTCTGCGATTCCACTCAAAATGCTGTGCAATTGTAAATGAAACATTTCTGGAAATTTGCACTTACTATTTTCAGGATAGGGTAGGTAATATGTAACTAACCACAGACAGCAAAACCATGAATAAGTGGGGCTGTTGTGCATTTTAATTTTCTGTGGCAGTTCATAAAATACCATTCTGCATGAATGCCAGTCACCCTGTTGGAAACATAGATTACTGACTGGGCATGGTGGCGCATAGCTCTAAGCCTTGCACTTGGGAGGCAGAGGCAGATGTGCCTCTGCGAGTTTAAGGCCAGCTACATAGTGAGGTCCAGGATAGCTAGAGCTACATAGTAAGACCCTGTCTCAAAATAAATAAAAATTTTAAAACATATTTATTTATTTAACACATATGAGTATGCTGTCACTGACACACCAGGAGATAGCATTGAATCCCACTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGACAATGTTCTTAACCACTGAGCCATCTCTCCAGCCCCCAAAATAAGTGAATTTTAAAAATTAAATTTATTGAGTTGGGATGTAGCTGGGTGTTCTTTGCAGGTTCCTATGTTTGATCTCCAGCGCTGCTGAGGGGCGGGGTGGTCCTTCTCTTCCTTTGGCCTACTGATTGGAAACTCAGAGAGCTAACTTTGACCCGGATGAGTCTAACACAGTGGCCTGCTGTTTGAGGGCGAAATCGTCTTTGTTTTGCTGTCCTTTCCATCTGACTTGAGTATTGGCGGTTTCTTAGAGTGTATATAATTATCAGACAGAGCGTCTCAAGACAGCAGTAACTCTTCACCAGCGCATAGTGGGCACGTCTTTAATTGAAGCATTCAGCGGCAGAAGGAGCTTTTTGTGAGTTTGAGACCAGGGTGGTCTACATATTGTGTTCCACAACAGCCAGCTACATGCGATGCCCTGTCCAAACCAAAATAAAACAACGAAAAAAACCAAGCAGCTGCTAAATTATACTGATTGTTTTTTTTCCCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTATACTGATTGTTTTTTATACTCTTTTGCATGAATTCCTCCATGAATATACTTTGCCATGGATAAG
Seq C2 exon
GATGTGAGGTCATCAAACCCAGTCTGATCTCCTGGTTGGAGGAAGAGGATTTGCACAGAGAAGATCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020356:ENSRNOT00000068461:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]