RnoINT0168720 @ rn6
Intron Retention
Gene
ENSRNOG00000030416 | Zfp870
Description
zinc finger protein 870 [Source:RGD Symbol;Acc:1597136]
Coordinates
chr7:15163490-15163866:-
Coord C1 exon
chr7:15163740-15163866
Coord A exon
chr7:15163551-15163739
Coord C2 exon
chr7:15163490-15163550
Length
189 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAC
5' ss Score
4.06
3' ss Seq
TTTCTGTGTCTGCATTTTAGGAA
3' ss Score
11.64
Exon sequences
Seq C1 exon
GAGTCAGTGAGCTTTGAGGATGTGGCTGTCAAGTTCACGCAGGAGGAGTGGGCTGTGCTGGATCCATCCCAGAAGAAGCTGTACAAAGATGTGATGCAGGAAACCCTGAGGAACCTGGCCTCTATAG
Seq A exon
GTACACATGGGCATTTCCTTTTTTGGTCCATCAATGTTTCTAGCTAATCAGTGTTGACGTATGAATTGGAATATGGAGAAGGGAACTGGGGAGAATTTGTCAAATGGGATACACCATGAATTTAGCTGGCATCCAGTACTTTTCCTCTAATTAATAATTAGTAATAGTTTTTCTGTGTCTGCATTTTAG
Seq C2 exon
GAAACAAGTTGAGCAAACAGAAGGTTGTGAGTGAGTATGAGAAACTATGGAGAAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030416:ENSRNOT00000042638:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGTGAGCTTTGAGGATGT
R:
TCCATAGTTTCTCATACTCACTCACA
Band lengths:
178-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]