MmuINT1035774 @ mm10
Intron Retention
Gene
ENSMUSG00000095325 | Zfp870
Description
zinc finger protein 870 [Source:MGI Symbol;Acc:MGI:3029586]
Coordinates
chr17:32885703-32886083:-
Coord C1 exon
chr17:32885957-32886083
Coord A exon
chr17:32885764-32885956
Coord C2 exon
chr17:32885703-32885763
Length
193 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
3' ss Seq
TTTCTGTGTCTGCATTTTAGGAA
3' ss Score
11.64
Exon sequences
Seq C1 exon
GAGTCAGTGAGCTTTGAGGATGTGGCTGTGAAGTTCACGCAGGAGGAGTGGGCTGTGCTGGATCCATCCCAGAAGAAGCTGTACAAAGATGTGATGCAGGAAACCCTGAAGAACCTGGCTTCCATAG
Seq A exon
GTAAACATGGGCATTGGCTTTTGTAGTCCATCAAGGACAAGTGTTTCTAGATAGTGTTGATGTATGAATTAGAATAGGGAGAAGGGAATTGGGGTGGATATGTTAGGTGGGATACACAAATGAATTTAGCTGGAATTCAGAACTTTTTCTCTAATTAATAATTAGTAATTAGTTTTCTGTGTCTGCATTTTAG
Seq C2 exon
GAAACAAGTCGGGCAAACAGAAGGTTATAAATGAGTATGGAAAACTATGGAGAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000095325:ENSMUST00000178401:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCTTTGAGGATGTGGCT
R:
GTTTTCTCCATAGTTTTCCATACTCA
Band lengths:
178-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types