RnoINT0168761 @ rn6
Intron Retention
Gene
ENSRNOG00000022742 | Zfp954
Description
zinc finger protein 954 [Source:RGD Symbol;Acc:1561308]
Coordinates
chr1:69853553-69855554:+
Coord C1 exon
chr1:69853553-69853791
Coord A exon
chr1:69853792-69855515
Coord C2 exon
chr1:69855516-69855554
Length
1724 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CACAGCCTTGTTTTTTACAGGTT
3' ss Score
9.38
Exon sequences
Seq C1 exon
TGTAACTTCCTGGACCCGTCAGTATGGTTCACAGAAAACTGGTGTCATCGGCTTTAGCCATGGCTGGAAAGCCGGCGCGTTAGAAGCGTTTGTCCTCCGTCTCAAAGACGGATCTGAGGTCTGCGACAACCCGTGTGATCTGATCCAGCCTTAGAGTGGGGATGGCCACGTCCCAGGGCCCCACCATCCTCTGGAGCCCAATGGTGATTGTGGAAGCTGCGGGTGGAGCCCTGCCCCAG
Seq A exon
GTGAGTGCCTAGTGATCGCCCACTTACCTGAGTTCGAAAGCGCTGAGATCTGGGTCAGGAGCCAACAGGGTATACCCGCCCCACCTCCCTCGCCCCATATCCCCAACTGTAAGAAACCGGAGGACGAAATTATGTATTTTGACATCTGTGTGCTAGCCATTCCTTCTCAGCTTCTGGTCAACTGCACCTCCCAAAGCTTGTGAGGCGGGCCTAATCTCGGAGACAGAGCCCTGGGGTGACCTCTGCTGGCATTAGATGAGGGAAAAGGCTCTTTGCACCTAAGGAGCTGACTTTTGTTTATAGAGACAGTGGCAGCCCCTGGAAGATTTGAACAGAGGTGAGACTTAGTCTATTCAAACTTTCCCAAGCATCCCCGGGGGAATATTGAGCAAGGATGAAGTGATATGGATGGAGACAGAGATCTATGAATCCTAGTCCTGTGTACTAATGCAGGAATTAGGGTTGTAGACCATAGAGGTAGAGATTAGTCTTCAAATATCTGATTTTTTTTTTTTTTGAGACAATAGTACTGGCAGTCCTGGACCTCCCTGTGTAAATCAGGCTGGAATCAACCTTGAAATGATTTATTTACTGACTTGCTTGCTTGCTTAGTTAGTTAGTTATGTGAAACCATTAAGCATTTGACTAAAGTGTACTACTTAACTATTTTTCCCCTCTAACTCACTCTGCGAGTATGGCTGGCCTATGTAGCCAATGCTGGCCTCAGTCTCACACAGATATGCCTTTGGTTTCACTTTGTAGACCTGACTGCCCTGGAACTCACTCTATAGGCCAGGCTGGCCTTGAACTCAAAGATCTACCTACCTCTGCCTTCCTAGTACTGGCATTAAAGGTATGTGCCACCACTGCCTGGCATTTTTTTTTTTTTGTTTTTTTGAGACAGGATTTTTCTGTATAGGATTAAAGATAAAAGCCGCCACCACCTGCCTCCCAAATTCTTATATTTTTGGTGTGAGCTTAGACTTTAACGACTGAACCATCGCTACAGCCCCCAAATTCTTAACTGACTGTATATAGATAAACTCATACATTCTGAAACAATTGTGTGTTTGTGAAATTCTAGACACATGCATTAGTCATGTGCATAGGAAAAGCCTGTACCGAGTACTTCACACACAGAACTGAGTTTGGTGCAATAATTTTCCTTTCGAGCTAGGATTGTGTGGTGGTTTTAATAAGAAGTACTTTCCTAAGCTCCTGTGTTTGAATGCTTAGTCACCGGGGAGTGGCACTGTTTGAGAAAAACTAAGAGGTGTGGCCTTGTTAAAAGAAATGTGTAGCTGGGAGAATTTGCTAAGGCTAGTGCTTGTCTGTCAGTATCCCTCCCCTACCCCACCCCTCTCTCTCCTGCTGCATCTATATTAGGATGTAAAGCTCTCATCAGTTACTGAACCAGTGCCACACCTATTTGTTCACACCATGTTAATAATAATGGACTAACCCCCATGAAACTAAAAGCAAGCCCTACTTAAATGCTTTTGGAAGAGTTGCCTTGGCCATGGTGTCGTCACAGCAGTAGAACAGTAAATGAGACATCTGCGTGTCCTCAGGCAACAAAGAGATTGATTCTTTGTCTGCATACCGTTAAGGGATGGAGCCCAGGGTCAGTTGGGGGTACCTGACTGCATGTATGAGAGGGGACTTAGGTGAACCTTTGAGATACCAACACTCTTGCTTGTTACTCACAGCCTTGTTTTTTACAG
Seq C2 exon
GTTTCCCAGTACTCAGTGAAACCTGCCAACCAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022742:ENSRNOT00000042086:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAACTTCCTGGACCCGTCA
R:
CTCTTCCTGGTTGGCAGGTTT
Band lengths:
278-2002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]