HsaINT0187184 @ hg38
Intron Retention
Gene
ENSG00000105136 | ZNF419
Description
zinc finger protein 419 [Source:HGNC Symbol;Acc:HGNC:20648]
Coordinates
chr19:57487741-57490185:+
Coord C1 exon
chr19:57487741-57487983
Coord A exon
chr19:57487984-57490146
Coord C2 exon
chr19:57490147-57490185
Length
2163 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATAGTCTTGATTTTCCATAGGTT
3' ss Score
8.87
Exon sequences
Seq C1 exon
GTCTCGTTTGGTATTCACTTTCGCGACTCAGGTGAACTAACCTGCGAGAAGCTGGTTGTGCGCTGAGGCGACCAGCGCCGGAAGGCACGGTGGCGACTCACGCTGTTCTCGCCGCTCAGAGGCGGGTCTGAGGCTCGGTGGCGGCGCCCAGGGTGGCCCGGGCCCTTTCCTCGGTCATTGTCTCCCCTCCAGCTCTACTCACAGGCTCCGATGGCGGCGGCCGCCCTGAGGGACCCCGCTCAG
Seq A exon
GTGAGCGCCGCGTCCTCCTGGCCTCCCCCGAATCCTAAAGCCCTGTGAGGGCCGCCTGCTCAGGTCCCCGGGTGCAGAACTGTGGGGCGTTCGTGCGCGGCGTCCCGTTTCTGACACGCAGTGTGATGGGGTGGCAATGGAGGGCAAGGGGCCCGGCTCGCAAAGATGTGAGGCGCATTCAGCGAGTCCCGAACCTGAGGCCTCCTGGTGTCTGTAGTGGGCAGCTTGGGAAGGGACGAGGCGCGTGTCGAGCGACAGCCCGAGCAGCTGCGCTTTCATCCTGAGGGGGCCACAGTGGCCGCGGAGGGCTGGAGACAGAAGAGTGACAAGATCTGTTTCTCAAAGTTTGCCAAAGGCCCTTCAAGTCAAAACAGACTGGGGTGGGGGTGAGGCGGGTGAAGACAGACCTGTGAGTAGGTAAATTCAGTAGACTAGTGGAGAGTCTACTGGGACTGGGCCACAGAGGAGGGGAAGTGATCAGATCTTGGATGGATATCAAAAACTGAACAGACAGGAATTCCTGTTGCATCAGATGTGACTGAAAGAAAGGGAATGAAGAGCCATTCTGGATTTTTATTTGTATTTTTGTTTGTTTGTTCCTGAATATCAGGAAGGATGGAGATGGGTAAGGCTGTGCAGGGAGTAGGTTTTGGACATGGTAATCCTGAGATGACCCAGAGTGGAGGTGTCGTGTCCACATGGGCAGCTTGCCCACTCACATCTGGAAGTTTGGGGAGGGATCTGGGCTGGAGATATGGTAGATATGGGCTGGTTGGGTAGAGGCCTGGACTAGGGTAAGTCCTGGGGCTCCTATTTAGGAGGGAGAATCTTAAGGTTCCCTTTCAGATGGGCCCTAAGGTGAGAGAAGGGAGAGATGGCCCTGTAGGACGGGGCTGCCTCTATAGCATGGAGTTTTGTGGTCAGAAGTGGTTCTGTCTGGTGTCTGCCGGAATGGAGGGTTATAGAGTATGAAGACCCAGGACTGCATGGAGACTGCAGTGTTGAGTAGTATATAGGTTTGCCACTCCAGGCTCAGCAGTTCCTCATGTACAGTCCGTATGGACAAAAGGAAACGTCAGCCAGGCTGCTGGAGCAGCCCCTTTGGTGCCTAAGTTTCCCTAGCCGTCAGCACAGGAGGGATGATCAACTGCTCCAGTAGAAGGGCTCTCAGCAGGATGGTCTTCAGGGGAGTATATAGCAGGCAGCCAGGTTGCCAAAAGGAATGGTATGTGCTCAGGTTTCTCAGACCCAGGTCCCAGTTTATTAACTTGTGAATTTATGAGGTAAGTATTTAAGCACTAATTGATCATAGTTCATATACACACAGGGGCAAATAAAACAACACGGATTTATTAAGTTAAACTGATGTAAGCACTTCATAATTGGTTGTAAAGTTAGTATACTGGAAAGTATTTGATTAAAATAAAGCACCTTAAGTATCACATTCTTAATTTAAAAGTAAGTTTAAGAAACCCATATTTTCTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTTCGCTTTTGTTGCCCAGGCTAAACTGCAATGGTGCAATCTCTGCTCACTGCAACCTCTGCCTCCCTGGTTCAAGCGATTCCCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCACCACGCTCAGCTAATTTTTATATTTTTAGTAGAGACGAGGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCTGACCTTAGACGATCTGCCCACCTCGGCCTCCCAAAGCATTGGGATTACAGGTGTGAGCCACTGCGCCTAGCCAGAAACCCACATTTTGAAAACCTACCAGTTTATTTGCGCTGAAAATGTTGACAGAAGCATTAATTATGTGTACAGTAAGAGTTGATACTTAGTCCTAGACACATAAGAATGAGTTTGATACAAACAATCGTCCTATTGAGTAAATACCATTATTATTGCCATGTTGCAGATGGCAACACCAAGGCACAGGGAAGTTGAGCACTTTTCCAAGGGCACACAACAGGTAAGAGGCATCACTAAGAACCAAAGCCCAGATTGTAGATAGTCAGGCACACCTGACTCCAGGCTAGACGAGTGGGCTTGGATGATCCTTTGGCAACATCACTGTCTGGTTCTCATAGTCTTGATTTTCCATAG
Seq C2 exon
GTTCCTGTGGCTGCAGACTTGCTTACAGACCATGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105136:ENST00000347466:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains