HsaINT0187184 @ hg19
Intron Retention
Gene
ENSG00000105136 | ZNF419
Description
zinc finger protein 419 [Source:HGNC Symbol;Acc:20648]
Coordinates
chr19:57999079-58001553:+
Coord C1 exon
chr19:57999079-57999351
Coord A exon
chr19:57999352-58001514
Coord C2 exon
chr19:58001515-58001553
Length
2163 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATAGTCTTGATTTTCCATAGGTT
3' ss Score
8.87
Exon sequences
Seq C1 exon
GTGCGACACGCAATGGGCGGGACTTCCGGCGTCTCGTTTGGTATTCACTTTCGCGACTCAGGTGAACTAACCTGCGAGAAGCTGGTTGTGCGCTGAGGCGACCAGCGCCGGAAGGCACGGTGGCGACTCACGCTGTTCTCGCCGCTCAGAGGCGGGTCTGAGGCTCGGTGGCGGCGCCCAGGGTGGCCCGGGCCCTTTCCTCGGTCATTGTCTCCCCTCCAGCTCTACTCACAGGCTCCGATGGCGGCGGCCGCCCTGAGGGACCCCGCTCAG
Seq A exon
GTGAGCGCCGCGTCCTCCTGGCCTCCCCCGAATCCTAAAGCCCTGTGAGGGCCGCCTGCTCAGGTCCCCGGGTGCAGAACTGTGGGGCGTTCGTGCGCGGCGTCCCGTTTCTGACACGCAGTGTGATGGGGTGGCAATGGAGGGCAAGGGGCCCGGCTCGCAAAGATGTGAGGCGCATTCAGCGAGTCCCGAACCTGAGGCCTCCTGGTGTCTGTAGTGGGCAGCTTGGGAAGGGACGAGGCGCGTGTCGAGCGACAGCCCGAGCAGCTGCGCTTTCATCCTGAGGGGGCCACAGTGGCCGCGGAGGGCTGGAGACAGAAGAGTGACAAGATCTGTTTCTCAAAGTTTGCCAAAGGCCCTTCAAGTCAAAACAGACTGGGGTGGGGGTGAGGCGGGTGAAGACAGACCTGTGAGTAGGTAAATTCAGTAGACTAGTGGAGAGTCTACTGGGACTGGGCCACAGAGGAGGGGAAGTGATCAGATCTTGGATGGATATCAAAAACTGAACAGACAGGAATTCCTGTTGCATCAGATGTGACTGAAAGAAAGGGAATGAAGAGCCATTCTGGATTTTTATTTGTATTTTTGTTTGTTTGTTCCTGAATATCAGGAAGGATGGAGATGGGTAAGGCTGTGCAGGGAGTAGGTTTTGGACATGGTAATCCTGAGATGACCCAGAGTGGAGGTGTCGTGTCCACATGGGCAGCTTGCCCACTCACATCTGGAAGTTTGGGGAGGGATCTGGGCTGGAGATATGGTAGATATGGGCTGGTTGGGTAGAGGCCTGGACTAGGGTAAGTCCTGGGGCTCCTATTTAGGAGGGAGAATCTTAAGGTTCCCTTTCAGATGGGCCCTAAGGTGAGAGAAGGGAGAGATGGCCCTGTAGGACGGGGCTGCCTCTATAGCATGGAGTTTTGTGGTCAGAAGTGGTTCTGTCTGGTGTCTGCCGGAATGGAGGGTTATAGAGTATGAAGACCCAGGACTGCATGGAGACTGCAGTGTTGAGTAGTATATAGGTTTGCCACTCCAGGCTCAGCAGTTCCTCATGTACAGTCCGTATGGACAAAAGGAAACGTCAGCCAGGCTGCTGGAGCAGCCCCTTTGGTGCCTAAGTTTCCCTAGCCGTCAGCACAGGAGGGATGATCAACTGCTCCAGTAGAAGGGCTCTCAGCAGGATGGTCTTCAGGGGAGTATATAGCAGGCAGCCAGGTTGCCAAAAGGAATGGTATGTGCTCAGGTTTCTCAGACCCAGGTCCCAGTTTATTAACTTGTGAATTTATGAGGTAAGTATTTAAGCACTAATTGATCATAGTTCATATACACACAGGGGCAAATAAAACAACACGGATTTATTAAGTTAAACTGATGTAAGCACTTCATAATTGGTTGTAAAGTTAGTATACTGGAAAGTATTTGATTAAAATAAAGCACCTTAAGTATCACATTCTTAATTTAAAAGTAAGTTTAAGAAACCCATATTTTCTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTTCGCTTTTGTTGCCCAGGCTAAACTGCAATGGTGCAATCTCTGCTCACTGCAACCTCTGCCTCCCTGGTTCAAGCGATTCCCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCACCACGCTCAGCTAATTTTTATATTTTTAGTAGAGACGAGGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCTGACCTTAGACGATCTGCCCACCTCGGCCTCCCAAAGCATTGGGATTACAGGTGTGAGCCACTGCGCCTAGCCAGAAACCCACATTTTGAAAACCTACCAGTTTATTTGCGCTGAAAATGTTGACAGAAGCATTAATTATGTGTACAGTAAGAGTTGATACTTAGTCCTAGACACATAAGAATGAGTTTGATACAAACAATCGTCCTATTGAGTAAATACCATTATTATTGCCATGTTGCAGATGGCAACACCAAGGCACAGGGAAGTTGAGCACTTTTCCAAGGGCACACAACAGGTAAGAGGCATCACTAAGAACCAAAGCCCAGATTGTAGATAGTCAGGCACACCTGACTCCAGGCTAGACGAGTGGGCTTGGATGATCCTTTGGCAACATCACTGTCTGGTTCTCATAGTCTTGATTTTCCATAG
Seq C2 exon
GTTCCTGTGGCTGCAGACTTGCTTACAGACCATGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105136-ZNF419:NM_024691:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)