MmuINT0179839 @ mm9
Intron Retention
Gene
ENSMUSG00000066838 | Zfp772
Description
zinc finger protein 772 [Source:MGI Symbol;Acc:MGI:2385265]
Coordinates
chr7:7160236-7162709:-
Coord C1 exon
chr7:7162429-7162709
Coord A exon
chr7:7160275-7162428
Coord C2 exon
chr7:7160236-7160274
Length
2154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACAACCTTGTTTTTCTACAGGTT
3' ss Score
10.92
Exon sequences
Seq C1 exon
GGACGCTGGGCGGGACTTTCGGCTTTGCGTGCAGGAGGTTCTTTGAAACTTTCTGGATCTGTCAGTCTGCTTCACAGAAAACTGGTTTTATCAGTATTGGTCATGGCAGGAAAACTGTAGAGTTGAGGCGTTTTTCCTCCGTCACGGAGACGGAGCTGAGGTTTTCGACAGCCCGTGTGATCTAATCCAAGCTTGGAGGAGGGATGGCCACATCCCAGGGCCCGGCTGGCCAGTGGAGCCCAATGGTGATTGTGGAGGCTGCGGGTGGAGCCCTGCCCCAG
Seq A exon
GTGAGTGCCTAGTGATCGCCCACCTACCTGAGTTCTAGAGCGCTGAGATCTGGGTCAGGAGCCAACAGGGTAGACTCCCATGTCCCCGACTGTAGGGCACCGGTGGACGAAATTATGGTAGTTGGGTTGTTTTGTTTTGTTTTGTTTTGTTTTTGTCATCTGTGTGCTAGATCGCTTGAGCCATCCCATCTGACTCAGTGTGGTGGACTGTACCTCTCAAGGCTTGTGGGAGGGCCTGAGCTCTACTGGCATTAGATGAGGGAATTAGATTAGATTCTGGTGGCCAAGAAGATTTGAACAGGTGAGAGATTCCATCTAGTCAGTTTTCTGAGCATGGGGTGGGGGTAATATGGGTGTAGGCAGAGACCTGTGAATCCTTGGGTAAATCCTGTGCACTCATGTTTGAGTTGGAATGCAAGCTGTAGCAGGGGTGGGGGAGTTGTAGGGTGGGTGATGGTGGTGTTCAGATCTTTGATGGAGTTATTTTATTCTCTCTGTATGCCCCTCTCCCCCACCTCCTTTCCTCCTCCACCGCCCCCAGGAGGCCTGGTGGGCTCCTGCTCTCCCTCCCTCCCTCTACCCTTTCCACTCTCTCCTCTTCCGTCTTCCTTAACCCCTCTCCCTATTCCTTTGCCTCTCTCCCTCTCCCTCCCCCTCCCCCTCTCCCTCTCCCCTCCTTCTCCCTCAGACTGGGCCTCTCTATGTAGTCATGGCTGTCCTGTCTCTCTATGTACCAGGGTGTCTTCAAACTCAGAGAGATTCTTCTATCTCTAACTCACAAGTGATGAGATTAAAGAACCCTTTGTTATATTTTTACTTTATTCATTTACTTTTGATCTAGGCTCAAACTCACTGTTTACACCACACTAGCCTCAAATTCACAGAGATTTGCCTTCTTGTGGGTTAGGGTCTCCTTTGGGTAAGGGCTGCCAACTGAACTCTGGTTCATGGTGGAAGAGCCCTAATCGGAGCCAACCACTCCTACCTTTCCAATGAGTTTTAAAAACTCAGCCATCAGGATGTGCTGCTGAACTAAGTGTAGCTGTGAGGGAAAATTAAATTAAAAATAATTTTATTTTTTAAATAATATTACTAAGTTATATTAGTAATTAAAATTAATATTACTAATTTTTAAATACTACTGAAAGATTTTACAATTCTATGATTGCATTCAGCATTTGAGTAGTCTGCCTTGTTATTAGCTATCCTCCCTCTCCCCATTGACACACCCCATGACTCTAGCTGACCTATATACATCATGTTGGCCTCAGATGCACAAAAGTCTGCTTGCTTCTGCCTTGCAAATGTTGTGTAAAGGCTAATTAATTCCAAAGTCTTAATTCAATGTGGGTAGACAAAACAACATTTTGAAATCATATGTACCCATTTGTGAAACTTTTGAAAGAAACATTAGTCATGTGCTCAGGAAGAGCCTGTACCAAATACTTGACACACAGGACTGAATTTGAGACTGTGATTCTCTTTTGTTTGTTTTTTTAAAGATTTATTTATTTTATGTATATGAGTACATGGTTGCTATCTTCAGACACACCAAAAGAGGGTAATCTCTCCAGCCCTATTAGTCTCTTTTTGGAATAGGAAGGTATGTTAGTTTTAATGAGAACAGTTCCCATAGGCTTAGATATTTGAATGCTCGGTCCCTAGAGTGTGGAACTGTTTGAGAAGAATTGGGAGGATTAGGAGGTAAGGTATTGTTGGAGGAAGGGCGTGGCTGGGAGTGAACTTTGAGGTTTCAGAAGCCCACGCCTAATCCAGTGCAAGTGTGTGTGTGTGTGTCTGCTGCCTGTAGATCAGAATGTAAAGACTTCAGGTATTGCCCTGGCCTCTCTTCTCCCCACCAAGCTAATCCTGGACGAACACTCTGAAACTGTTAGCTAGCACCCAGTTAAATGCTTTCTTTTAATTGTAAGAATTTCCTTGGCCATGGTGTCTCTTCACGTCAATAAAACATTAAATTTTATCCTCAGGTAACAAACTGAAGAGATTGATTCTTTGTCCAAGGTCACCCAGTAAGAGACACCATTAAGGGATGGAGCGCAGTGGGTACCTGACTGCATGTATGAGAGGGGACTTGGGTGAACCTTTGGGATACCAACACTCTTGCTTATTACTCACAACCTTGTTTTTCTACAG
Seq C2 exon
GTTTCCCAGTATTCAGTGAAACCTGCCAACCAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066838-Zfp772:NM_145577:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: