RnoINT0168768 @ rn6
Intron Retention
Gene
ENSRNOG00000026874 | Zfp956
Description
zinc finger protein 956 [Source:RGD Symbol;Acc:1304879]
Coordinates
chr4:77627512-77632581:+
Coord C1 exon
chr4:77627512-77627638
Coord A exon
chr4:77627639-77632473
Coord C2 exon
chr4:77632474-77632581
Length
4835 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GCTTCTTCTCTTTTCCGCAGAAA
3' ss Score
11.63
Exon sequences
Seq C1 exon
GTTTCTGTGATTACTGAAGAGGTGACTGGGTGTTTCCCAGAGCAACAGGAAGGCAGCCCGGAAGACTGGCAAAAGGAGCTCTGTAAGCATGTGGCAAAGGAAAGGCGTGAGGTGCTGGGCTCTCTAG
Seq A exon
GTAAGAGACATTCCCCGGGCTTCCAAATGTCTTTTCACTCTTTTCCTCAGTAATTAGACCTGGGAGGTCTAATTTAGAGTTAAGTGTAGGCATGCTTCTATTTGTGAGTGTGAGTTGTTTTGCCTGTGTGTATTCTGTGCTTCCATCCGATGTTTGCCTGGTTCCTGCAGCGGCCAGAAGAGGGCACTGGATTCCCTAGATCCAGTTACAGGTTATTAGCTGCCGTGAATGTACTCAGAATAGAACCTGGATCCCAGCAGTCCATGTTCTTAACCACTGAGCCATCTGTCTAGCCCCATGGGCATGTCTGAGAAGTGAGGACCAGCATTAGATCCTCTGGCCAAGTCTGCAGGACTGAGTTTGTGTGAGACTTGATTAAATTTTGTAGCTATGTCCCCAGCTCTTGAATTGTCCTGGAGCTTGCAGAGAGGTTAAGTGGCTTATCCAGACCCACAGGTTAGAGTCTGCTCCCCACTCTCCAGTTCTTCCCAGTTCACTTCTATAGAATAGAGGCTGGCTTCCTCTACTTATGTTTGTCCCTCTGGGTCTGTAGTGAGGCAGATAGTTTACCACCTCTATTAGACTTCTGATACTCTGTTTATGCCCATGGCCCAGCTCTTTACCCTGCTTCCACCATGGTGTGCTCTCTTCAGAGAAGGAACTAAGTCTTAGTGTGATGTTTCTCTTCCCCTGTGCCTGGCGCACTCTAGGATGATAACAATGAATGAGTACTGGGTCAGTATGGGAGCTGAGAGCTTAGTTTTCATTCTCTGTTAGTTAATAGCACCAAGTTGGAATGCAGATTGTAAAGCCATTTGCATTAATAAGAGATCAAACCTTGCAAATTCTAAGGGAAGCCCCTCCCATTGAGTTATAGCTCTAGTCTTTTGTTTCTCTCTCTCAGACAGGACCTTGCTATAACTCAGGCTAGCTGGGAAGTTACTGGGTTGCTCAGGCTAGTAAATTTGTGCCTTCTACCTCAGCCTTTGGAGTATTGGGATTATAGGATTATTTTTTTTTTCTTTTTTCTTTTTTTTTCTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTCGCTAGGCAAGCGCTCTTCCGCTGAGCTAAATCCCCAACCCCTAGGATTATATTATATTGCTTTTTGAAACTTTTTAAAGGTGAAGAAACCCTTAGTTCAAATGACAGAAACAATAGAAGGGATTGCTCTTTTATTATTATTATTATTATATAGTTTATTTATTTATTCTATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTTCATTGCAGATGGTTGTGAGACACCATGTGGTTTCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAATGCTCTCCAACTACTGAACCATTTCTTCAGCCCCCAGAAGGGATCATTCTTATTGAAAGAGAATAGATTCCTGTTTACTCAGAACACAAAGGTACCATTCCCTCCATGTATGTGTGTAAAGTTATTACTATAGATTCACAAGATTAGTCTGACAGTTATTCTAAGATTTTTAAAAATCGCTTGAGCCAATTACTGAGCAGTTATTCCTCCCTTCTAAACCTCCATGCTGGTCTGACTTCCTCCAGACAAGATTCCCATCTTCCTTGCATTTTTTCATCCTTCCTTCATCCAGCTCTCTTCTGATGTTTTTTTCTCCACTTCTCCTCCTGGCTTCCTCCTTCATTTCTGTCCCTTTCTCCATCCCTTTTTAGTATTGGAAAAAAAGTCCCACCTTATTTTCTTTAAAACTCTGTATTGGCCTGTGGCTTTTTTTGGCAAGGCAGAAAATGAATGAGGAGCAATGTTTATTCAAACTTGAAACAGTTGCTTCTAAGAATAAACATAACAAAGCCATATCCATATTAAAACAAGATATGAGGCACTAACCTTTACACATTGCACACACACACAAAATCATACCTTCTTGTCTGTCTGTGCCTGTTGAGGTACTGCACACTGATGTTAGATCCCCTAGTAATGAAGTTAGTCGGTGGTGAGCATCTCCATGTGGGTGCTGGGAACTGAACCTAGGTCCTCTGCAAGAGCAATCTCTCAAGCCCCTTTCCTTGCTTTTAGATTTTTACTGTATTTGAGAAGAAAAGCCCTCATTTAAAGGGGTCTCTGGGTGGGTAAATTAAGGAAGAATTCACTGAGTGGTTGGCAAGTTGCACTAAGATTAAAAACTTTTTGGGGTCCCTGCAGGGGTAGGGACAACAGAGAGACCAGAGTGCCAGCATACAGAAGTCAGTGGGAAGTGCTTGGAAGATACAAAGGATCATGAGGACGTGCTTGGTGGGTGGTAGCACTTGTTGGCTCACTGAGGACGCTTCTACAAGAGCCAGATGGCAACCCTTCCTGTTGTACAGAAAGGCCTAGGACCCTGTGTTAGGCATGGTCAAGAAGCAGATGCAGGAGAGGCTGCTATGTCCCTGGAGGGACCCACAACTCTCCTGTGGAGCTTGGCATGCTGTGGAATTGTGGTGACCTCAGAGCTCAGGACTGCCTATCCTTTGATAGTCCTGGCTGTTACCCACCCTCGGTTGGCTTCTCACTGTCATTTGATATAAACTTGCTTAGTTTCCTAGAAGTTTCCAAAGGCAGCTCTTCCTGCCAAATTTCCAAGGAAAGCATAATTGGGAATCTTCCATCAGTAAGCATGAGCATTACAGTTTCAGCATGTACAAGTGGCTTGGGTACCTCAGAGTCTGAGACGTTGGTTATAGGGACCCCCTTGGACAGGGACAGCTGAGCCTCTAACCTTTGATTATATAAGTACATTCTTACATAAACGTGTTTTTGCTCAGCAGTGCAGAGGTCAAGCATTTCTCTCTCTGGATAGGGTTTTCCTTGTAGCCCTGGTTGGCTAGAACGTACTATAGAGACCAGGTGGGCCTTAAATTTGGAGCCATCATTCTGCCTCTGCCTTCTGAGTGCTGGGATTACAGCTGTGCCCCGTTTAAAAGGCTTCTCGTGGGCTGGAGAGATGGTCTCTGAAGCTCAGAGCACACGCTACTATCCAGAGGTCCTAAATTTGATTCCCAGCACCTATATTGGACATCCGTATCAGGCAGCTGTTAGCTGCTGGTTGCTCCAGCTCTAGGGGATCTGACTCCTGTGTCTTCTGAGCACACTGCACTCATGTGCAGATACATATACACAGCCTAATTTTTTTTAAAGCCTCTCTTTACTGGGACCTCCCCCATCTCAAGCCTCTCCATGTAGCTGATAATCTTATTACAGTCTGTATACAGAGACCTCACAAAGTACTCTGGAAGTCAGAGGACAGCTTGTAGGAATCACTTTTCTCCTCCTATCTTGTGGGTTCCAGGAATCTAACTCAGGTCATCAGACTTTGTGGCAAGCACTTTACCCGGGTAATATGTTACTATTGACTTCTTTCTCCAGAGCTTGAAGTGCTACTTGCAAAAAACTTGGTTTCCCAACTGCTTGGTTAAAATCACAGAAGCAGCCTGTTTGGGGAGGCAGGCACACGTGGCTGGGCAGCGTCTTCTCTGTGTGACTGGATCTCAGGTGCCTTTGGAACAGTGGGAAGCTGACCCTGTATTTCTGGGTCAAAACCTAGCACAATGTTGAACCACATGGTTAGTAGCTCTGTAGTTGTGGCTTGAAATTGAAATGTTCTTCACTTTTAAAACTTTTAACACTTATTTTCACATAAAATAAATAAATTTATTTATATAACATAAATTTATGCACTGGTTGCTGGTTCCCCCTGCAGTGGGGATGCATGATTGCTGTGGTGTGGATGTAGAGCTTAGATTGGCACAATTAGTGAAGTCACTTGTCCCTTGAAGGACACTTACCCTAGGGTGCTGTGCTACATAGGCTGCCAGAGAGAGATTGCTGGCGACCCCAGCTGCTTGGTTAAAATTACAGAGGCATCCTGGGTAATGCACATCAGCTTAGACAAGATGGTTTTTCTTACTCCTAATGGACTTGTCTGAAGCTCAAGATGTCCGAGACCCAGGGACCTTTACCTTGTTGCTTTACCTTTCTATGGAGTAGCCTTGCTACTGCAGCTCTAGGTGACCGTTAGGAAGCTTAGTGAAGCTGGGCATGGTAGCAAACACCTTTCACCCCAGTACTAAGGAAACAGAAGCAGGTGGAACTTTGTGAGGCCAGCCTGGTCTACATAGTGAGATCCTGTCTCCAAAAAGAACCAAACAAAACTAGTAGGAGCTGGGTGTGGCAAGTTCCAGGATAGCCAGGGCCACTTAGAGAAACTCTGTCTTGAAAAACAAAACTGAAAGGTTCTAGGAGGGAAAGAAGAATTGCCCTTTCTCTTAGGATGCTACATTTATTTCCAATTTAACAAGCCAAGTTAGTACTTATGCACTATAAATATTAATTCATTTATATCCCTTGTAGGTTTTTGTCTTTTCCTATTTGTAAATGAAGAAACTAAGACATAGAGAGGCTAGGGAAATTATAGCTGGAAAAGTCTGAGCCCTTACATCTCTTGGTTATCTGCTTGAAGGAGTATTTTAGAAACATGGTCTGTATTCTGGAGCGACTGTGGCCTAGCCTAAGGGGTGGTAGTGATGGAAGGCTATGGGCCCTTGTGCATAGACTACTGCTGGCTGTTCAGAAGCCATGTATCCCTGCTCTCCTGACTCCCTACCACACCTCATGTTAGCCTTACCAGAAATCCCAGTATTTGTTCTGTCTTTGATGGCCTCTGGTTCTTTTGAGAGTGCATGGTGGTCACTGGTCCTGGACAGAGATGGTGACAGGAAAGACCATGACATTTGATCCCCTCAGAGCTTCTTCTCTTTTCCGCAG
Seq C2 exon
AAACAGGCCAGCTGGAATCTGCCCCGAGTGTTCTTCCCTGGATCAAGCAAGAGGAAGAGGTGTGTGAGAAGAGCCTGCAAGAGACAACCAGTGCATCCCTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026874:ENSRNOT00000059263:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=NA C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]