RnoINT0168824 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11343042-11344033:-
Coord C1 exon
chr7:11343847-11344033
Coord A exon
chr7:11343188-11343846
Coord C2 exon
chr7:11343042-11343187
Length
659 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAG
5' ss Score
3.14
3' ss Seq
CCGACCCTGGTTTCTGGCAGGGT
3' ss Score
6.19
Exon sequences
Seq C1 exon
GTCTTCAAGTTGCACACCAGGCTAGGGAAGCCCATTCCCTCTGAGCCCACACCACGGAGTGTCACCTACACCCGAGGTTCGGACAGCACCCCTGAGACCTCAGTCAAGCATGAAGCTCATGCCCGTCACAGCTCACACACCCAAGGCCGGCCAGCACCAGCCAAGGGACCAGCAGCCTCACGCAAGG
Seq A exon
GTACAGGTCTCTACAGCTCTGTACATGTGGACAGATGACTGTATCAGCACCCCTCACCGGGGGAAATCAGGCAGGAACTCTGCCCCCGAGCCCGTCCCCAGCTTTTGGATTTTTAGGAGTGGTTTCTTGTTTTTGTTTTTTTCTTTTTAAGACAGGATTGCTCTGTGTAGTCCTGGCTATCCTGGAACTCACTCCATAGACCAGGCTAGCCTCAAACTCAGAGACCCATCTATCCATGCCTCCCAAGGTCTGGGATTGAAGGTGTGCCCACCGTACCCTGCCAGCTCTTGGTTTTTGAGACAGGGTCTCACTATGTAACCCATGGTGAACTGGAACTGGTGATCCTCCTGCCTTATCCTTCTGAGCCCAGGATTCCAAGTGTGTGCCACCAGTCTTATGAAAACTTAGTTTGAACGGAAGGCCGCTGTCCTTTGGCGTTCCCTCGAGGTGACCCATCCGCCTCAGCTAGGCAGTGGCCTTTGCTCTCAGCTTGCGTGATAGCATGGCCTGCCCTTCTGTGGCTGCAGGATTCCATGTGGTGGCCCATGGTAGTTTCCACAAGAGGGAACGGCCAGCTACCCCTCTGGTTTAGAGTCCTGTGGTGTGTAGGGAAGGGATGGGGCAGGCCTGAGGTTGCAGCCGACCCTGGTTTCTGGCAG
Seq C2 exon
GGTCACCTGAGCTACAGACAGTGCACAGCTGGCCTGGAGACAGGCGGCCATCACACTGCAAGGCAGAGGCCACCAGGGGAGGCTCCGGGGAAGCTTCGGGGATCTCGGGAGACACGGAGCCAGTAGGCACAGAGTACGTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAAGTTGCACACCAGGC
R:
GCTCGACGTACTCTGTGCCTA
Band lengths:
330-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]