MmuINT0180116 @ mm10
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81242770-81243795:+
Coord C1 exon
chr10:81242770-81242956
Coord A exon
chr10:81242957-81243649
Coord C2 exon
chr10:81243650-81243795
Length
693 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAG
5' ss Score
3.14
3' ss Seq
CCCACCATGGTTTCTGGCAGGGC
3' ss Score
5.75
Exon sequences
Seq C1 exon
GTCTTCAAGTTGCACACCAGGCTAGGGAAGCCCATTCCCTCTGAGCCCACACCACGGAGTGTCACCTACACCCGAGGTTCGGACAGCACCCCCGAGACCTCAGTCAAGCATGAAGCTCATGCCCGTCACAGCTCACACACCCAAGGCCGGCCAGCACCAGCCAAGGGATCAGCAGCCTCACGCAAGG
Seq A exon
GTACAGGTCTCTACAGTTCTGTACATGTGAACAGATGACTGTATCCAGCGCCCCTCACTGGGGGAATCTAGGCAGGAGCTCCACCCCTAAGCCCACCCCCAGCTTTTGGATTTTTAGGTACAGTTTTTATTTATTGGTTTGTTTTGTTTTGTTTTGTTTAAAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTCAGACTCACAGAGATCCTCCTGCCTCTGCCTCCCAAGTTCTGGGATTGAAGGCGTGCGCCACCACACCCTGCCAGCTCTCGGTTTTTGAGGCAGGATCTCACCGTGTAACCCGTGGTGACCTGGAACTGATTGGTGCTCCTCCTGCCCTATCCTCCTAAGTGCAGGATTCCAGGTGTGAGCCACCAGCTTTGTGACAACTTAGCTTGAATGGAAGGTCACTGTCCTTTGGAGTTCTCTTGAGGTGACCCATTCACATCAGACAGTCAGTGGCCATTTGCTGAGCTACTGTCTGTCTCTGCTCTTGGCTTGGGTGATATCACAGCCTGCCCTTCTGTGGCTGCAGGATACCATGGTAGTTTCCACAAGAGGGAGTGGCCAGCTAGCTCCCCCTCAGGTTTAGAGTCCCGTGGCATGTAGGGGAAGGGATGGGGCAGGCCTGAGGTTGCAGCCCACCATGGTTTCTGGCAG
Seq C2 exon
GGCCACCTGAGCTGCAGACAATGCATGGCCGACCTGGAGACAGGCGGCCATCACACTTCAAGGTGGAGGCCACCAGGGGAGGCCCTGGGGAAGCTTCGGGGAGCTCTGGAGACATGGCGCCAGTGGGCACAGAGTATGTTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949:ENSMUST00000117798:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAAGTTGCACACCAGGC
R:
AACATACTCTGTGCCCACTGG
Band lengths:
326-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types