HsaINT0185624 @ hg19
Intron Retention
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3823244-3825405:-
Coord C1 exon
chr19:3825228-3825405
Coord A exon
chr19:3823402-3825227
Coord C2 exon
chr19:3823244-3823401
Length
1826 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
GACATGGTTTTTCCCCTCAGGGC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTCTTCAAGCTGCACGCCAAACTGGGGAAGCCCATTCCCACCCTCGAGCCTGCACTGGCCACAGAGAGCCCCCCCGGGGCAGAGGCCAAGCCCACGTCCCCCACTGGCCCCAGCGTGTGTGCCTCGAGCAGGCCAGCGCTGGCCAAGAGACCCGTGGCCTCGAAGGCCTTATGCGAGG
Seq A exon
GTACGTGTGTCTGTATGCGTGTTCGTGTACCCACCAGAGCCCTGGCCGCCTAGTGAAAGTTTCGTGAGAAAATCTACCATCCAGTCGATTTTCGTCATGTCTTCCCGGGGGGTGGTGAGGGGCTGGCTGGTGCCGTCTCTCCCTTATTCCTGCAGAGCAAGATGGCCTCCCACTGGCCCACACCGCCCTGAACCTTGGAGACCCTTTGAGACCATTTCCAGAGAGTGCTGGCAGAACCAATAAAATGGTAATGCCATTTCTTCCTGTAGAGTTTTTTTGTTTTGTTTTGGTTTGAGATGGAGCCTCGCTCTGTCCTCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTATAGGCATGCACCACCACGCCCGGCTAATTTTTGTATTTTTCGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCAGCCTCGGCATTCCAAAGTGCTGGGATCACAGGCGTAAGCCACTGCGCCCGGCCTCTTCTGGTAGAATCTGGCCTGGTGCCGGGTGCTGGGGTTCTCTGGAAGCCCTCACCCTGCACCTACAGGGTTCCCTGGGCTGCCACCTCCACTGTGCTCCCCTGCATGCCCTGGTGCTCACGGTGAACAAATTGGGCTCAGAATCAGAGTTATATGGGTACCAGGAAATGAAGGTGGAATCCTCACACCCCTCTGCCTGTGACCCTACCTTCCCTGCGTGCAAAGCCCCAGCTGTCAGAGCTGACCCGCGTTAACTAGGATTACATGCCAGGCGTCTGCTCACTGCTTTGTGTGCATTGCTTCGCTTTACCTCCACGACAACTCTTTTTTCGTGGTTTGTTTTGTTTTGTTTTTGAGACAGAGTCTCACTGTGTCACCCGGGCTGGAGTGCAGAGGTGCAATCATAGCTCACTGCAGCCTCCACCTCCTGGGCTCAAGCGATCCTCCCAGCTCAGCCTCCTGAGTAACTGGGACTACAGGTGTGCACCACCACATCCCACTACTTTTTGTATTTTTTTTTGTAGAGGTGGGGTTCTGCTATGTTGCTGGGGCTGGTCGGAAACTCCTAGGCTTAAGCGATCCTCCCAACTCGGCCTCCCGCAGCACTGGGTTTACAGGCATGAGCCACTGTGCCCAGCCCACAACTCATTTGAGTCAATGTTGTCACCAGTCCCAATGTGTAGATGGAAAAGCCGTAAACGGTGGAGGTGGAATTGGAACCCGGGTCTGTCTAAGAGTCTCTGCCCTGGACCACCGTGCTGTGCGTGGGCAGGGGTCGAGGGAGCCACATTCTATTTTTAGCCTCAGCAGCGTTGATTCTTGAATAGCAACATGATTTTGAAGATCAAACCATCAAGTCATTCTTATAACAAAGATATTTGTCTCCCCCCGAGGCTCCATCATTTCGCCTAACGGGGGTAGGTTAAGTGCGAGCCTTGGTCCGCCTGATACTTCATGGTCTATTAACTGTGGATTTTGTGCTGTCGGTGGGTTCCTCAAGCGAGGGCCTAAAACCAGGGCTTCTCCCCGGATGGATTGAAATTGGCCTCGGTTTCTTGGCTGGGTCACACGCAGGCATGAAAGGGAGAGCGAGGTTGCTGTCCGGGGCCATTCCCCCTGACATCACAGGAGGGAGGGGGATGGCACAGCCTGCAGTCTGGGTGGCTCTCCACCCCATGCCGCCTGGCGGGTCTGCAGCTGCAGTGCTTTCTCCTGGAACAGGGTATAAGTGACATGGTTTTTCCCCTCAG
Seq C2 exon
GGCCTCCTGAGCCACAGGCAGCAGGCTGCAGACCCCAGTGGGGGAAACCAGCCCAACCTAAATTAGAGGGTCCCGGAGCACCTACCCAAGGAGGCTCAAAGGAAGCTCCCGCGGGCTGCTCTGATGCGCAGCCGGTGGGCCCGGAATATGTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-ZFR2:NM_015174:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.883 A=NA C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGCTGCACGCCAAAC
R:
CTCCTCCACATATTCCGGGCC
Band lengths:
334-2160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)