MmuINT0180116 @ mm9
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:80705515-80706540:+
Coord C1 exon
chr10:80705515-80705701
Coord A exon
chr10:80705702-80706394
Coord C2 exon
chr10:80706395-80706540
Length
693 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAG
5' ss Score
3.14
3' ss Seq
CCCACCATGGTTTCTGGCAGGGC
3' ss Score
5.75
Exon sequences
Seq C1 exon
GTCTTCAAGTTGCACACCAGGCTAGGGAAGCCCATTCCCTCTGAGCCCACACCACGGAGTGTCACCTACACCCGAGGTTCGGACAGCACCCCCGAGACCTCAGTCAAGCATGAAGCTCATGCCCGTCACAGCTCACACACCCAAGGCCGGCCAGCACCAGCCAAGGGATCAGCAGCCTCACGCAAGG
Seq A exon
GTACAGGTCTCTACAGTTCTGTACATGTGAACAGATGACTGTATCCAGCGCCCCTCACTGGGGGAATCTAGGCAGGAGCTCCACCCCTAAGCCCACCCCCAGCTTTTGGATTTTTAGGTACAGTTTTTATTTATTGGTTTGTTTTGTTTTGTTTTGTTTAAAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTCAGACTCACAGAGATCCTCCTGCCTCTGCCTCCCAAGTTCTGGGATTGAAGGCGTGCGCCACCACACCCTGCCAGCTCTCGGTTTTTGAGGCAGGATCTCACCGTGTAACCCGTGGTGACCTGGAACTGATTGGTGCTCCTCCTGCCCTATCCTCCTAAGTGCAGGATTCCAGGTGTGAGCCACCAGCTTTGTGACAACTTAGCTTGAATGGAAGGTCACTGTCCTTTGGAGTTCTCTTGAGGTGACCCATTCACATCAGACAGTCAGTGGCCATTTGCTGAGCTACTGTCTGTCTCTGCTCTTGGCTTGGGTGATATCACAGCCTGCCCTTCTGTGGCTGCAGGATACCATGGTAGTTTCCACAAGAGGGAGTGGCCAGCTAGCTCCCCCTCAGGTTTAGAGTCCCGTGGCATGTAGGGGAAGGGATGGGGCAGGCCTGAGGTTGCAGCCCACCATGGTTTCTGGCAG
Seq C2 exon
GGCCACCTGAGCTGCAGACAATGCATGGCCGACCTGGAGACAGGCGGCCATCACACTTCAAGGTGGAGGCCACCAGGGGAGGCCCTGGGGAAGCTTCGGGGAGCTCTGGAGACATGGCGCCAGTGGGCACAGAGTATGTTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-Zfr2:NM_001034895:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAAGTTGCACACCAGGC
R:
AACATACTCTGTGCCCACTGG
Band lengths:
326-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: