BtaINT0164453 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21388418-21389875:+
Coord C1 exon
chr7:21388418-21388465
Coord A exon
chr7:21388466-21389714
Coord C2 exon
chr7:21389715-21389875
Length
1249 bp
Sequences
Splice sites
5' ss Seq
GAAGTGTGG
5' ss Score
-1.8
3' ss Seq
CATGAAGTTCTTCCCTCCAGGGC
3' ss Score
7.7
Exon sequences
Seq C1 exon
GATTCCGGCCGGGTGGTGCCTCCTGGTGCCTTTGGTCCACCTGGGGAA
Seq A exon
GTGTGGGCAGTGAGATGGCAGCTTCCATTTCCTCTCCTGGAGCTTGGGACCCAGCGAGTGCTGCTCACGCGAGCCCCGCCCTGGGCCTGGAGCAGCCCCTCAATGGCCCTGGTGCTGGATGCAGCCCCCTCCCCCAGGTGCTCTGATCACTTAAGTGGGCACCGGGAGGTTAAGGCGGGCTCCTTGCAACCCCGCCTCCCCTCGGGTGTGCACCCTCCGCATCTGTCGCTGTGACCGAGGCCCTGTGTGGCATGGGTACATAGGCTTCCGTGTCAGGAGCTCCACTGACGGCGTCATGTGCAGGGCCTGACTCTCCCCCTATGATGCTTTAGATTTGTCATCAGTCCCACTTTACAGATGGAAGAACTGAGGTGTGGCAAAGCATTTGGCCCCCGGGCCGCCTGGTGAGCAGTGGAGGTGGGGTTCTACCCCAGTGTGGGACAGTCTTTGCTCTCTACCACCACATTGAGGGATGGGGGGCTATTTTATTTTGAGCCTCAGCAGGACTGAGGTTTGAACAGTCATGTGATAGTGAAGATGTAAAGCAGTTTTGGTGACAAAGAAATGTCTCCCTGGACTTCCCTAGTAGCTCAGTGGTAAATAACCTGCCACTTTACAATGCTGGAGACATAGGTTCAATCCCTGGTTCAGGAAGATCCCACCTGCCACAGGACAGCTAAGCCTGTGAGCCACAACTGCTGAGCCAGCACTCCAGAGCCTGTACTCTGCACAAGAGAGGACACCGCAGTGAAAACCCACGCACCACAGCAGAGTAGCCCCAACTCTCCGCAACTAAAGAAAAGCACTGGCAGCCACAAAGACCCAGTGCAGCCATAAATAAATTAATTGTTTTTAAAAACACATTAAAAAAAAGTCTCTCTTCTGGGGCTCAATGAACCAAGGTCAGTGAACGTGACCCTGGTCCACCTGGTGTCCACTGTTGACTAAGGGCTGCAGACTCCGCAGTTGACGGAGGATGTCCTCAGTGAGAGGCTACAACCCGGGCCTCCCTGTGGACCCGTCCGCCTGGGCACAAAACACCATGAGGCTCCCGCTCTCCAGTTGTGACCCGAGCTGGTGGGTGAGGTTCTCACAGGACCACGGACCCCACAGGCTGACGTCACGAGGGGATGAGAGGGACGGCGGGGGACCCAGTGGCCTTGTGTTGTACGCTTCCAGCTGGTGGGCCAGGAGCTGGCCATGGTTTCTGGCTGGAGCAGGCTACAAGTCATGAAGTTCTTCCCTCCAG
Seq C2 exon
GGCCTCCTGCGCTGCCAGCAACTGACTGCAGAGCCCCCCACGGGAAACCAGCGACCCCCAGATCAGAGCGGCCCGGGGAGCCGTCCGCCCGAGGAGGCTCTACAGAAGCTTCTGGAAGCAGCTGTGAGGGGCAGCCAGTGGGCCCAGGCTACGTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755:ENSBTAT00000001004:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGTGCCTCCTGGTG
R:
CTCCTCCACGTAGCCTGGG
Band lengths:
199-1448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]