RnoINT0168992 @ rn6
Intron Retention
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231906712-231909154:+
Coord C1 exon
chr2:231906712-231906832
Coord A exon
chr2:231906833-231908552
Coord C2 exon
chr2:231908553-231909154
Length
1720 bp
Sequences
Splice sites
5' ss Seq
CTGGTGACC
5' ss Score
2.02
3' ss Seq
AGCATTATGTTTTCTTTCAGGAT
3' ss Score
9.7
Exon sequences
Seq C1 exon
GTGATTTCTCCAGAAAAGATCTCTGCATTCAGCCCTGCACCTACTTTTTCTTTCAACACAAGAAGTGAAGACTCTGAGCTTGAATTCTCTGAAGAGTCTCTGAAAACAAGAACTTTCCCTG
Seq A exon
GTGACCTTCATTTTCTCAGCCATTATCTGTGAGAGTGTACTGGGCTATGAATGTCAGGGAACCAAGTCTCTTCCCCTGCACTTGTTCTGTCGTGGATGCTGTTCCAAGTGCACTCCCTCTCTAGCTCTTGCTTCCTTCTCCGCTGTCTCTTCACTCCCTCTCAAAGTGTCCCTACCCACCATGCACTGTTAGCACTTCTTGCAGCTGAAATGTCAACACTTGGCTCCCCTTTCTGTCCTGCAGTGAAGTGACCCATAGCAGATGTCTCATCAGCGCCACTTGTGACCTCAGCATAGCCTCTTCCTCTCTGCTTTGGGCTGCTGTCAGTGTCAGGACCTCCTCAGTGACTGTTCTCTTCCAGCACTGCGCTCAGGCCAGTTTGACTTTTCTGCTTCTTGAAAAGTATTTTATTCAATAGGAGCTCTTCCCACTAACTTCTGTTTTCTGAAAATTTCATTAATGTGTATTTTTTCTTAATCTGAAGTTAGGTTTGGTGGTTGATGTTTTCTTGCTTGTGAGTGTATGATTAATAAAAAAAAAAGATAATTTAATGTGAATCAGTAGTTGAGCTAGGGATGGATTCGTGGTTGTGTCTGGTTGAAGGCAAAAAAAGAAAAAGGTCGGGGTAGGAGGAGATGTGAACAGGGTGGGCATGAGGTGATATTCTTGTAATCCCAGCACTCAAGAGACAAGGCAGGAGGATCAGTACTTGAAGGCCTGGACTACTTGGGGCAAAGGAGGGGAGTGCATGGGAGAATCGCCTCCTCTGAACATAGTCAGGTGGCAGTGGAGTGGAGGGGGCTTCCACAGCTCTGAGTCTTAGCTCTGTAATAGTTTTATTTCTGTCACTGTTTCTTGATTCAGTTTTGGATTCTAACTGAACACTTCACCAAAAAATATTCTTTCGCTCACTGCTATACTCTCCAGATGATTATCAAAATTTATTTCCATAAAATAGACTAAGTCAAATAAGTAAAAAATCTATAATTTTTTTAGATAAAACATAATAATTTAATAATATATAATTCCTAGGCAGTTTTGCCGATTCATTAATATATTCAATAAATACTTACTGCTTTTTACTTTTTCAGCAATTTCTCTGTTCCAATAGTTGCTGATAGAAAGAAGGAATTATAAAACTTATTTAGACAAAAGCTCACTATCCTATCTATGTGCTAATTTTACAAATAAAGCTAAAGATCTTTTTGTTGTGAAAGGTATAATGCATAAATACATAATAAAGATAGTTGCAATCACATGGTATTAAGTGAACTATGAACTTTGCAGAAGGCATGAGAATAGATATGAACTCACTCCGTGTTTTCTTTGACTGCCACTTGGTACATACTGCACTTGGATCTTGGTTACCTCATCTATAAGATAAGGATGCTATAGCTTTCCTCAGATTTAAACGCCTTGAAAACTTAGATGCTCTATAAATATAATGAGTAGTTAAATTAAAGATGCTTAGCGCAGTAGAAGGAAAGAGAAGGACATATATTTGTTAGATTTGCAAGTCTTCAATTTTGTAAATTACATTTTGAATCTTTAGATCTTGATATTAAAGCATTTAGTTCATGAGGGAGCACGAGACTTACATTATTTTCTGTCTTACACAGAAAGTCAGAATCTTCTGCTCTTGCCTGTACCCACTGTTTTCTAGAGTCTGGTGATGATTGGTTGAACATTTGTAGTAAATCAGCATTATGTTTTCTTTCAG
Seq C2 exon
GATTGAAAAACATTGGTTTTCAGGACAATAAGAACTTCCAAAGGTTTCCATTTTTAAGTGGAGCCTCAGTTCCCTTTGTCACTTTGCCACCAGATGATGGACCAGCAGTCTTAGATTCTTGTTCATTTATGATCGATGATGACACACGAGAGCCTTCTGGTTCTTCCAGGTTGAACCTGTGTGAAGAATCAGGTCTTTCATTTGACCTTGGACTTGAGGACCAGGATGGGATTCCACGAGATGTCTTACTGCTTCCTAAGAGTTCTACTCAAAGCAAGTGGCTGAAATATCAAAACCCATCCCACTGCAACTCAGCTGCTCTGAACAGAATTGCCAGTGAAGTGACAGAGGATCTCTCTGCTGAGGCTGTCTCTGGCTTGCATTTTAGCCACACAAGTGAGAGTGAGAGTTCTGTAGACCCTGTGCACTTGCAGATGATAAAAGGCATGCTCTATCAACAGCAGCAGGATTTTACCAGTCAAGATTTGGTTTCCAGACAGAAAGCTCTCTCTCTGAATTTAAATCAGACCTCCAGGACTGGGGAACTTCGGACTGCGTTAGGAAGCTCTGCCAGCAGTAATTGCAGAGTCAGGGATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980:ENSRNOT00000014695:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCTGCATTCAGCCCTGC
R:
TCTCGTGGAATCCCATCCTGG
Band lengths:
345-2065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]