RnoINT0169034 @ rn6
Intron Retention
Gene
ENSRNOG00000004104 | Zkscan7
Description
zinc finger with KRAB and SCAN domains 7 [Source:RGD Symbol;Acc:1305242]
Coordinates
chr8:131933387-131935470:+
Coord C1 exon
chr8:131933387-131933614
Coord A exon
chr8:131933615-131934946
Coord C2 exon
chr8:131934947-131935470
Length
1332 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCTCTTTGTATTTCTGTAGGTG
3' ss Score
10.84
Exon sequences
Seq C1 exon
GCCATTGTTGCCATTTCTTAGTGTCCTGGAGGTGTGTGGCGCTGGTGAGCCATCGCGCATGCGGGTGGCGACGCGGTGGGAAGTGCGGCCCGCACTCGGGGCGCGACACCGGCAGAGCCGGGGTGCTTGCCCGAGGCGGAGCCTCCTCGCGCTCGGGTCGCTTGGCTTGGGGTCGGCTCGGGTTGTTGGCGCCCGTGCGTCAGCGCTGCACGGGTCAGACGCGGCCAG
Seq A exon
GTGAGCGGCCACCGAGGCAGGGCGGTGACTCTGGAGCGAGCCCCACGTGAGCTCGCACCACTGATGTGCAGCGAGATCAGCCGCTAACCACTCGGGACAGTAAGGACAGCAGGAAAGTGTCCTGTGCTCTTGTGTACTCTCGGAGAGTTCACAGATTATGCTGTCTTAAAAAAAGCCAAACAAACAAAACAGACAGGTTCAGGAAAATGTCTAATCCTGGGGTCTGCAGTGCCTGATATCTCAGACCACAGCGTACACCCCAGTTGCCCCAGAGGATGCATAAACGGCATTCATAAACGGGAAAATTTTTTCCCAAAATTTGTCCGCTAAACTAACCGCATTCGTTTAATATATCTCTGTCCTTGTGTAACACATATGCACGTGTGCATGACTGGAAAGCCAGTCCTGCCTTTTAAGTCTTCCCAGGAAACGGAGCCCACGTCTTTGTAAACTGCAAACAATGGCATTAAGAGAAGTGATCCGGCCGAGGTATGGGTGGAGAGAAGTCAGATTATTAAAGCTATAAGTACTGGTATGCCCGATGAGACCAGAAAGGCTCCAAGTTAAGTAGAAAAGACTTCCAAAGATTTTTATACCAGTTCCTCCCTTTGGTTGGCCCTCCTGTAGTTTAGAAGCCATGACTGGTGAGTTCTGCACAAAATAGTTGAAGTACACTGTTATATAGTATGAAGTACAGCAAGGGAAACAATCCACTGTTTTATATCTGGGGCAAGCAGGAAAATATTCTTCAAGAGTAGTATTTATTCTGGGTCTTAACACTTGAGTAGAGTTTGTCAGAAATGAAGAAAAAGAACAGGGAAGGTGCAGACAGTTAAAGTGAGTCTTCCCCGCCCCACCCCCTGGCCCCATTTGTAGAGCATCAGTCTCAAACTTCTGTACGTCTTCACCAGTTGTAGAGTTTTGAGCCTCCACTCCCAACACAAGTTTATTAAAACTTAAAGATAAATCCTATTAGAATTTCAGTGCTTACTACAGGGCATATTAAATAGGAGTTAAATCATTTAGTATTTTCTTTAACACCCTGTTTTCTTGCATACCCTACTTTGTAGGTCATTGCTGTCCTTTTAATTTGGGTACTTGGGGAGAATGGGTGAAGGTGGGTGAAAGGCTATGAAAGGTAAGCCTAGACATTTAGTTAGCTTTACCCTGCAGGTGACTAGAGCCACTAAAAGTTTGAGAAGAGCAGTCACTTGGAGTGATTGTTCTGTTTGTACTCTTTTCCCCTGAAGTTTGGCTTTTAGCTGCAGAATCTGTCACCAGCTTAAGAGTTAGACCTCCAGGGCTCTGATTGTTCTCTTTGTATTTCTGTAG
Seq C2 exon
GTGACACTCTCCTCACCTCCTTTCTTGACTCTGAAAAACAGTTCCTGCAGCTTGAAGCAGAGACTCATTTCCAGTGTGCCTGCTGTAGCTGGGACCAGCTTCTCTCTGGGATCACAATGACCATGGAAGGCAGGGGGACACTAGATATCATCCCCAGGACTGCGGTGTATCAGAAGCAGGAGGGGAGCTTGACTGTAAAGCAGGAACCAGGAAGCCAGACCTGGGGACAGAAGAACTGCCCTCCTGTCTGTGAAATATTCCGACTGCACTTCAGGCAGCTGTGTTACCATGAGATGTCTGGCCCTCAGCAGGCCCTGAGCCGGCTCAGGGAGCTCTGCCACTGGTGGCTGATGCCAGAGGTCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGAGCATCCTGCCCAGGGAGCTTCAGACCTGGGTGCAGCTGCATCACCCCGAGACTGGCGAGGAGGCTGTGGCCGTGGTGGAGGATTTCCAGAGACACCTTAGTGAGTCAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004104:ENSRNOT00000043784:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.110
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(96.9=68.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGTCCTGGAGGTGTGTGG
R:
ATCTAGTGTCCCCCTGCCTTC
Band lengths:
356-1688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]