HsaINT0186287 @ hg38
Intron Retention
Gene
ENSG00000196345 | ZKSCAN7
Description
zinc finger with KRAB and SCAN domains 7 [Source:HGNC Symbol;Acc:HGNC:12955]
Coordinates
chr3:44555208-44557470:+
Coord C1 exon
chr3:44555208-44555518
Coord A exon
chr3:44555519-44556929
Coord C2 exon
chr3:44556930-44557470
Length
1411 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
TTTCACTCTTGTTTCTGTAGGCC
3' ss Score
10.72
Exon sequences
Seq C1 exon
ATTGTTTTTGGTCTAACGGGCAGTAGAGTGTCCGGCTTCGGTGCCGAGTGCCACCGCGAGTGGGCCGAGACGCGGAGGGAGGCGCGGCCGGAGCTCGGGTCGCCGACGCTGGCCAGGACCGCGCTTCTTCCCGGCGGCAGGCGGCGCGGTCCCCGTGACTCTCAGAAGCCGCCCGATGTAGAGCCGCTTCTTTGTCTCATACCCCTGACCATTCGTGCGTGGCACGGAGCCGGGTATCTGCGGGTACAGCGATGAACAGGGCAGACGTGGCCAGGTGAGCGGCGCTGCTGAAGCCTGGTTTAACACGAAAG
Seq A exon
GTAGATCGCTGTTTTCCCAGCTCTTGCAGTAGGAAACTGTATGAACTGTCATATTTGGGTCAGACCCAGGCTCAGAATCGCAAACGTGGAGCGTGACTTGGAAATGCAAAAATCCAATTGAGATTTTAAAGTGCTGAGCATTCGGAACACTATGGGAAGCAGGAGAATGGCCTGAACTTTCTACATATATGGGATCTTAGAGCAGAGTTTACAGATTATTTTAAAGTCCTTCTTTGTCTTTTTAAAGAGATTGAGACACAGGGATCTGGGCTCTTGGTGAACTGGAAGCACAGCACAGATGCCCTAGTTACCAGTAAGGTGCTGATTTTAAAACGTTCAAAGTTTTCCTCCACTTCAGTGTCAGCTAAATGTATCATATTCATTCATTTCCCAATTATGTGTGCCATGTGCACACGTGTACAAAGATGACTGGAAGTCAGCTCTGCCCTTTGTATCCTCCCAGAAAGCAGGGGAGACAGTCGTGTAAACCACAAACGATTACAGTGTGAGATGTGCTCTACTAGAGGTTTGAATGAAAAAGGTAGTTTGGGATCACTGAGACAATAACCACCTCTCTAAGCCTAGCGTGATCAGGAAGGCTTTCTAGGGGAGGTGCATTGAGTAAAAAAAGGTCTAGTATTTTCTGATTCCATTTGGTTCCTTTCCTTTGGTGGCCGTGCAGCAGTTTGGAGGGTGAGAGTGGTGAGTTGTGCATAAACCAGTTAAAGGGTTATAGTGAGAGGTACACAAAGGGAAGCTACCAGCACTCTTCCTGATGGGGCAATCAGGAAAACCAAGAAAAAGTTGCCTTTGTTCATGGTCTTGACAGACAAGTTTGCCAAAAGTTGAAGAAGAAAAATTCAAAGAAAGAGTATGTGTGGCTTCTAAGTGTGTCTCTAGAGCTTTAGCTCCAAACTTTCTTTATTTTGCATTTCTATCAGTAGAAGAGGTTTGATCACTTACTCCCTACATTGGTTTATTTGTAATTTAAACATGAATACTACTATACAAATTGTAATGCACATTATAAAACATACATTAAATAGGAGTTAAATAACTTAGTATTTTCTCTTGCACCCTTTGGGATAGCCTGCATTTCCCACATTGGAGACCATTGCTGTCTTTCTAGCATGGGTACTTGGGGTGAGTGGTAGAGGGTGTGGCTGGTTGTGAAGGGGGTAAGGCCAGGTTGTGAAGGGCTGTGAATGCAAGGCATAGACATTTAGATTTTATCCTGTAGGTAATGGGAGCCACTGAAACTTTAAGAAGGGCATCATTTGGAGAGATGCTTACTAAGAATGCCTGGTTGTGTTCTTTTTTCCTGGAGCTTTGTTTTTTAACTCAGTGGAGGATTGTCATCAGCCTGGGGCTGAATACTCCAAGAACTCTGATTTCACTCTTGTTTCTGTAG
Seq C2 exon
GCCACACTACCATCACCCCTTTCTCCAACCCTGAAAAACAGTTCCTGAGACCTGAACTATTGACCATCATTTTAATCGGACCAACTGCAGCTGTAACAAGCTTCTCTTTGGGGTCACAATGACCACTGCAGGCAGGGGAAATTTAGGCCTCATCCCCAGGAGCACTGCTTTCCAGAAGCAAGAGGGGCGCCTGACTGTGAAGCAGGAGCCAGCAAACCAGACCTGGGGGCAGGGCAGCAGTCTCCAGAAGAACTATCCTCCTGTCTGCGAAATCTTCCGGCTACACTTCAGGCAATTGTGTTACCACGAGATGTCTGGGCCGCAGGAAGCATTGAGCCGGCTTCGGGAGCTCTGCCGCTGGTGGCTCATGCCAGAGGTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTTGAGCAGTTCCTGAGCATCCTCCCTGGGGAGCTCCGGACCTGGGTGCAGCTGCATCACCCTGAGAGTGGTGAGGAGGCTGTGGCTGTGGTGGAGGATTTCCAGAGACACCTCAGTGGATCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345:ENST00000273320:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.190
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(96.9=66.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGCGATGAACAGGGCAG
R:
GTGTAGCCGGAAGATTTCGCA
Band lengths:
354-1765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains