HsaINT0186287 @ hg19
Intron Retention
Gene
ENSG00000196345 | ZNF167
Description
zinc finger protein 167 [Source:HGNC Symbol;Acc:12955]
Coordinates
chr3:44596713-44598962:+
Coord C1 exon
chr3:44596713-44597010
Coord A exon
chr3:44597011-44598421
Coord C2 exon
chr3:44598422-44598962
Length
1411 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
TTTCACTCTTGTTTCTGTAGGCC
3' ss Score
10.72
Exon sequences
Seq C1 exon
TAACGGGCAGTAGAGTGTCCGGCTTCGGTGCCGAGTGCCACCGCGAGTGGGCCGAGACGCGGAGGGAGGCGCGGCCGGAGCTCGGGTCGCCGACGCTGGCCAGGACCGCGCTTCTTCCCGGCGGCAGGCGGCGCGGTCCCCGTGACTCTCAGAAGCCGCCCGATGTAGAGCCGCTTCTTTGTCTCATACCCCTGACCATTCGTGCGTGGCACGGAGCCGGGTATCTGCGGGTACAGCGATGAACAGGGCAGACGTGGCCAGGTGAGCGGCGCTGCTGAAGCCTGGTTTAACACGAAAG
Seq A exon
GTAGATCGCTGTTTTCCCAGCTCTTGCAGTAGGAAACTGTATGAACTGTCATATTTGGGTCAGACCCAGGCTCAGAATCGCAAACGTGGAGCGTGACTTGGAAATGCAAAAATCCAATTGAGATTTTAAAGTGCTGAGCATTCGGAACACTATGGGAAGCAGGAGAATGGCCTGAACTTTCTACATATATGGGATCTTAGAGCAGAGTTTACAGATTATTTTAAAGTCCTTCTTTGTCTTTTTAAAGAGATTGAGACACAGGGATCTGGGCTCTTGGTGAACTGGAAGCACAGCACAGATGCCCTAGTTACCAGTAAGGTGCTGATTTTAAAACGTTCAAAGTTTTCCTCCACTTCAGTGTCAGCTAAATGTATCATATTCATTCATTTCCCAATTATGTGTGCCATGTGCACACGTGTACAAAGATGACTGGAAGTCAGCTCTGCCCTTTGTATCCTCCCAGAAAGCAGGGGAGACAGTCGTGTAAACCACAAACGATTACAGTGTGAGATGTGCTCTACTAGAGGTTTGAATGAAAAAGGTAGTTTGGGATCACTGAGACAATAACCACCTCTCTAAGCCTAGCGTGATCAGGAAGGCTTTCTAGGGGAGGTGCATTGAGTAAAAAAAGGTCTAGTATTTTCTGATTCCATTTGGTTCCTTTCCTTTGGTGGCCGTGCAGCAGTTTGGAGGGTGAGAGTGGTGAGTTGTGCATAAACCAGTTAAAGGGTTATAGTGAGAGGTACACAAAGGGAAGCTACCAGCACTCTTCCTGATGGGGCAATCAGGAAAACCAAGAAAAAGTTGCCTTTGTTCATGGTCTTGACAGACAAGTTTGCCAAAAGTTGAAGAAGAAAAATTCAAAGAAAGAGTATGTGTGGCTTCTAAGTGTGTCTCTAGAGCTTTAGCTCCAAACTTTCTTTATTTTGCATTTCTATCAGTAGAAGAGGTTTGATCACTTACTCCCTACATTGGTTTATTTGTAATTTAAACATGAATACTACTATACAAATTGTAATGCACATTATAAAACATACATTAAATAGGAGTTAAATAACTTAGTATTTTCTCTTGCACCCTTTGGGATAGCCTGCATTTCCCACATTGGAGACCATTGCTGTCTTTCTAGCATGGGTACTTGGGGTGAGTGGTAGAGGGTGTGGCTGGTTGTGAAGGGGGTAAGGCCAGGTTGTGAAGGGCTGTGAATGCAAGGCATAGACATTTAGATTTTATCCTGTAGGTAATGGGAGCCACTGAAACTTTAAGAAGGGCATCATTTGGAGAGATGCTTACTAAGAATGCCTGGTTGTGTTCTTTTTTCCTGGAGCTTTGTTTTTTAACTCAGTGGAGGATTGTCATCAGCCTGGGGCTGAATACTCCAAGAACTCTGATTTCACTCTTGTTTCTGTAG
Seq C2 exon
GCCACACTACCATCACCCCTTTCTCCAACCCTGAAAAACAGTTCCTGAGACCTGAACTATTGACCATCATTTTAATCGGACCAACTGCAGCTGTAACAAGCTTCTCTTTGGGGTCACAATGACCACTGCAGGCAGGGGAAATTTAGGCCTCATCCCCAGGAGCACTGCTTTCCAGAAGCAAGAGGGGCGCCTGACTGTGAAGCAGGAGCCAGCAAACCAGACCTGGGGGCAGGGCAGCAGTCTCCAGAAGAACTATCCTCCTGTCTGCGAAATCTTCCGGCTACACTTCAGGCAATTGTGTTACCACGAGATGTCTGGGCCGCAGGAAGCATTGAGCCGGCTTCGGGAGCTCTGCCGCTGGTGGCTCATGCCAGAGGTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTTGAGCAGTTCCTGAGCATCCTCCCTGGGGAGCTCCGGACCTGGGTGCAGCTGCATCACCCTGAGAGTGGTGAGGAGGCTGTGGCTGTGGTGGAGGATTTCCAGAGACACCTCAGTGGATCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345-ZNF167:NM_018651:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.189
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(96.9=66.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGCGATGAACAGGGCAG
R:
GTGTAGCCGGAAGATTTCGCA
Band lengths:
354-1765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)