HsaALTD0007379-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000196345 | ZNF167
Description
zinc finger protein 167 [Source:HGNC Symbol;Acc:12955]
Coordinates
chr3:44596873-44598962:+
Coord C1 exon
chr3:44596873-44596973
Coord A exon
NA
Coord C2 exon
chr3:44598422-44598962
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTCACTCTTGTTTCTGTAGGCC
3' ss Score
10.72
Exon sequences
Seq C1 exon
CGATGTAGAGCCGCTTCTTTGTCTCATACCCCTGACCATTCGTGCGTGGCACGGAGCCGGGTATCTGCGGGTACAGCGATGAACAGGGCAGACGTGGCCAG
Seq A exon
NA
Seq C2 exon
GCCACACTACCATCACCCCTTTCTCCAACCCTGAAAAACAGTTCCTGAGACCTGAACTATTGACCATCATTTTAATCGGACCAACTGCAGCTGTAACAAGCTTCTCTTTGGGGTCACAATGACCACTGCAGGCAGGGGAAATTTAGGCCTCATCCCCAGGAGCACTGCTTTCCAGAAGCAAGAGGGGCGCCTGACTGTGAAGCAGGAGCCAGCAAACCAGACCTGGGGGCAGGGCAGCAGTCTCCAGAAGAACTATCCTCCTGTCTGCGAAATCTTCCGGCTACACTTCAGGCAATTGTGTTACCACGAGATGTCTGGGCCGCAGGAAGCATTGAGCCGGCTTCGGGAGCTCTGCCGCTGGTGGCTCATGCCAGAGGTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTTGAGCAGTTCCTGAGCATCCTCCCTGGGGAGCTCCGGACCTGGGTGCAGCTGCATCACCCTGAGAGTGGTGAGGAGGCTGTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.189
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(96.9=66.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACCCCTGACCATTCGTGC
R:
TTCAGGGTTGGAGAAAGGGGT
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)