RnoINT0169466 @ rn6
Intron Retention
Gene
ENSRNOG00000052959 | Zscan12
Description
zinc finger and SCAN domain containing 12 [Source:RGD Symbol;Acc:628738]
Coordinates
chr17:45283850-45284563:-
Coord C1 exon
chr17:45284532-45284563
Coord A exon
chr17:45284257-45284531
Coord C2 exon
chr17:45283850-45284256
Length
275 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTGATAAATCTTTTATATAGCTA
3' ss Score
4.75
Exon sequences
Seq C1 exon
TTAGTTGTGGTTTACTTTAGGAGTTAGTGGAG
Seq A exon
GTAAGTTTCTTACCAAACTTTACTCCCTAAAGTCCTGAAACAATTTGACGTCTTTGTCACTTTTGTCTATTTTTGTGAAAGTTCGTGTACTTCCAATCAATAAGAATAAATTAATGGGAGGACAGTCTTTCAACTCTCCCACTTAAATCTTAAGAGTATGTGCCATTTGCTTATTGTAGTTTGTATTAGTAATGATGACTTATCCCTTAGGTCTACTCGGTAAGAAAATTTACCAAGGAGTTATTACTTGAAACACTGATAAATCTTTTATATAG
Seq C2 exon
CTATGATGGCATCCACTAACGATACCAAGATCTGTAAGAACCAAGATGGACTTTTGGAAATAAAAATGGAGGAAGAGTGTAAGTATACCACCAGACAAGTTAGGAACCTCCAAAAGAACACTTATAACAGAGACGTCTTCCGAAAATACTTCAGACAGTTTTGCTACCAGGAAACATCTGGACCCCGGGAGGCTTTGAGCCGACTCCGGGAACTTTGCCATCAGTGGTTGCGACCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAACAGTTCTTGACCATCCTGCCTGAGGAGCTGCAGGCCTGGGTGCAGGAGCAGAATCCTGAGAGTGTGGAGGAGGTAGTGACTGTGCTGGAGGATTTAGAGAGAGAACTAGATGAACTAGGATACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052959:ENSRNOT00000086879:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=69.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTTACTTTAGGAGTTAGTGGA
R:
ACCAGCAGCTCCAGGATCTG
Band lengths:
301-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]