BtaINT0164947 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031874 | ZNF165
Description
Bos taurus zinc finger protein 165 (ZNF165), mRNA. [Source:RefSeq mRNA;Acc:NM_001191376]
Coordinates
chr23:30336166-30343084:-
Coord C1 exon
chr23:30343050-30343084
Coord A exon
chr23:30336649-30343049
Coord C2 exon
chr23:30336166-30336648
Length
6401 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TAATCTTTTTAATCCCTCAGGAG
3' ss Score
7.11
Exon sequences
Seq C1 exon
GGAAGTGTCCGATCGGAACCAGCCCTGTGGAAGAG
Seq A exon
GTGAGTCCGGGTCTGGGGACCCAGGTGTCCGGTCCTTTGTCTCCTTTAAACACCCAGTCCCTATCATGTTTCCTTCGGGATTGCAACAGCCCTGTGACACTCTGGGCCTGGGACCTTAGAGGAATCCCGAGGAAATGTGGAACTAGGTTTGGCGTTGGGAAAGCGTTTGCGCCGGCCTATATCTGGAATGGATAGGGGTTTCCATAGTTACCCCGCCGCGCGTGACGTCATCGTTGAGCGCTGCGAAGGCGTGGTCTGGGGGACTGCGGGCCTTCCGGCTGGCTGAGATTTTGGGGTCACTGGGAAAAGAAGTGGCCTGACCCAGTTGGGCGAGGCGGGGAAGGGTGGCATCTGTCTCGGGTCGACTGCGTTCTGCCAGAAGAAACTGTCCCAGGGTCCGCCCCAGACTCCTGCTCTCCTTCTGGGAGAAGTAACCCGCCTTTTTGTACGAAAAGTGGGACAGCTCCGGCATCCTCAAGAAATTTATTCACACAGTAAATATTTAGTATTTCCTGTGCATTTCCTGTGTGCTGGGGATGCCTAGAAACTAATATTGAAACGAGTATCGCGTTTTCGAATGAGAGACCAGACAGCAAAACAGGAAAGTTAGTTGGAAGACCGGAAAGTGCCTCAGTGTGAGAAACATAAGGGGCTGTGAGAGCCTTCGTCATTACGCACTGTGAATCCCCTGTTCCACTCTGTGACCTCTACTGGAGGTATAGCCCCCCACACCTCATACTTATAACTCATCGTACACACCCGGAAGCTACCCATCCAACAAGAACCTACTATTCATCCAGCAGGAAACCTCCACTTTACCAGTTCTCCAACGTAACTAATTACTCCTTACTCTCTTTACCAAACCTCCAATGTAACTAATTACTCCTTGAAGTGAAGTCAGTCAGTCGTGTCCGACTCTTAGCGACCCCATGGACTGTATCGTACCAGGCTCCTCAGTTCACGGAATTTTCCAGGCAAGAGTACTGAAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAACCCAGAACGAACCCGGGTGTCCGGCAGGGCAGGCAGACACTTTACCGTCTGAGCCACCAGGGAAGCCTAAATTACTCCTTACTCTGTTGTAATATTTGTTTATATATTTACTTAGCTCCTCTAGGCTGCCGCCCCTGACCTCGGGCGTGGGGTAGTTCCCATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTAACTGTATGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAACCTATATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGAACGTTAAGGCTATATATGGTCACCCTGCTTATTTAACTTCTATGCAGAGTACATCATGAGAAACGCTGGACTGGAAGAAGTACAAACTGGCATCCAGATTGCCGGGAGAAATACCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAAAAATTAAAAAGCCTCTTGATGAAAGTCAAAGAGGGAAAAAAAAAAAAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACAAAGATCATGGCATCTGGTCCCATCACTTCATGGCAAATCGATGGGGAAACAGTGGAAACAGTATCAGACTTTATTTTGGGGGGCTCCAAAATCACTGCAGATGGTGATTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGATTACTTTGCCAACATACAAACATACATACAACATATAACATACATAGTCCATCTAGTCAAGGCTATGGTTTTTCCAGTAGTCATGTATGGATGTTAGAGTTGGACTGTGAAGAAAGCTGAGCACCTAAGAATTGATGCTTTTGAGCTGTGGTATTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATTTACCCAGTCCATTCTAAAGGAAATCAGTCCTGAGTGTTCTTTGGAAGGAGTGATGCTAAGGCTGAAACTCCAATACTTTGGCCACCTCATGTGAAGAGTTGACTCATTGGAAAAGACTGATGCTGGGAGGGATTGGGGGCATGAGGAAAAGGGGATGACAGAGGATGAGATGGCTGGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGTGATTCATGGGGTCGCAAAGAGTCGGACACGACTGAGCAACTGAAGTGAACTGAACTTGCTTAGCTACTCTTTGTAACGCTCCTCCTACACAGTGATTGTAAAGCACTAGATGCTCAAAAAATGTTTACTAGTTTGAGGTTATTAAGACATTTGAAACCCAGCTTTAGGGAGAATATATAAAATCCTTGCAAATTAGATTATTTTTATCTAGAGTTGTGGGCTGTTTTAAGTGGATAAGAAGTGATTAAACATCTGAAGACAAAACTTTCAGCTATCTGAAGGGGTAACATATGTTGTAGAATGAGATAATGCCCATAAAGTATTAGGCCAGTTCAGTTCAGTTGCTCCGTCGTGTCCGACTCTTTGCGACCCCATGAATCACAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTCAAACTCGTGTCCATCGAGTCGGTGATGCCAGCCAGCCATCTCATCTTCTGTCATCCCCTTCTCCTCCTGCCCCTAATCCCTCCCAGCATCAGGGTCTTTTCCAATGAGTCAACTTTTCGCATGAGGTGGCCAAAGTATTGGAGTTTCAGCTTTAGCATCAGTCCTTCCAGTGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGACCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCCCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAACCTTGACTAGACAGACCATTATTGGCAAAGTAATATCTCCGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAATAAGCGTCTTTTAATTTCATGGCTGCAGTCATCATCTGCAGTGATTTTGGAGCCCAAAAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCGATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTCATTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTTTTTAGTTCTTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCAGCAATCTTGATACCAGCTTGTACTTCTTCCAGCTGAGCATTTCTCATGATGTACTCTGCATAGAAGTTAAATAAGCAGGGTGACCATATACAGCCTTGACGTACTTCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCCTACCTGCATATAAGTTTCTCAAGAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTTAAAGGCTTTGGCATAGTCAGTAAAGCAGAAATAGATGTTTTTCTGGAACTCTTTTCCTTTTTTGATGATCCAGCACTAGCTGGTAAACAGTTAACACGTCTAGAAAACATAACAAGAAGTTAAATTAGCTCTCTATATCAAAAGAATGTCCCAATAAATTAATAAGAATTGAAACATACATCATAGCTCCAAACCCCACTCCCACTTTCCTCCTCTGTCATTGCTAAATTTTTACCTCGTTTACACCCACTCAGACTCTTGTTTTCCAAGATTCAGTCTGAGCCTGTGAGCTTCATTTCATACTCTCGGAGAATTATCCTCAATTTTTATGTTTAACTTCCCTTTCCATGGATCTTATCTAAACTTGTATTTCCATTCCTAACTTCTTTCCATTAAATCTCTTAATATCTTTTGGAAATGTTTTTCTAAGTGGACGTCTCATTAGCATCTAAAATATGCAATATACAAAGCAATAGGAAACTCAAACTTCTTAATTTCCCCTTTTATCCAATAAATCAACAAAAGTGAGAACTTAAGAATAAATATTAATAATGCATGGTCCTTCACTTCATGGGGCTCCAATCCATAAAAAAACATTGAAAATAATACAAGATGATATGTGTTCTATCCACAGATGTTATGTGTTAGGAACCTAGAACTCAAAGTCAAGTTAATGAATTCTTTCTCAGAGGTTTTAGAATTCTTAGTCACTCCAGTTACACCCTGTAAGCTGGTCTCACTATCAATCTGCTGTTCATTCACACTTTCTCAGCTCTTTACTCTCCCTTCCTTTTTGCCTTTCTGGATTTTTCTTATCCTTTATTGTTACAGGTTAAGCCCCACTACCTGTAGGAAATATTTGCACACGTACACACACATTCTCCCTCTACCTCAGAACTATTAAGCTATTCAGTGTCTCTACCATACAATCTGTTCAGTACATCAGCTTTCAACATTTATCAAACATTTTCAGTGTGTGTCATGTGAAGCAGGTTTTGTTATTTAAATGTTGCATATCCATATGTGTTTTGTGTCATTTCTTTCCAACTCTTTTGCAAACTCCTTGGAAACTCAAACACTATTTTTAAAATTCCTTATATCTGTACATCAGAATACAGAAAATCCTGGCATATCCCGTATTAACCAGATCAGCATCACCATAGGCAGAAGGCCAAGGAATCTGTTTCTAACAAAGTTCTCACATGACAGGCAGTGAGCCCGGTTCTGAATTCAGACTTTCTTAGAAATCACTGCCATATAACTTCTAGCCCAATGCTTTGCCGTTATAAGGTCTTAATAAAGTATATGTTTGTGCAACAATCAGTAGTCAGCTTGGTGAAATGTTTAGTAGAAGGACCTGAAAGATGGATATTTGCCTTTCACTAGGGCTTCACTTCTGAATTACTTTATTCAGTTTTTCAGTTCAGATGCAAAACAGACCATTCCCAAGTGCTGCTAGGACTTGAGGAACTGATATCTAATGATAAGATTCACAAAAGATTGATAAGCAGGTCTTGGTGCAGTTTATTATGCTTTATTGGTAATCTAATAGGCCTCAATATCTAGGACATGGACTGAGCCATTAAACTCAGAAGGCAGAGAGAATTGTTGAGACAAAAGGAAACAGATTTATCTAAGAACTTGAGAGAAGAAGCTCATTACACTGAAATAGTTAACCTCGGCCTTTAAGGAAAGTTGCCTGATTTTTATTATTTAAGAAATGTCTTAGTAATCCTAGTTCAGTGTTCTGAATAATTATAACATTCTAAGCCTGTGTTTTCCCCACACTTTGAGGGCAGTTGCCTCTTTATATTTCTGTCCTATTATGGTCCATCCTAAAGATGAACAATATATTTATCTCCACAAACAGCATTTATCAGGCCATTCTGCTCAGAAGCTTTCACTGGCTCCCCAGTGCGTAAAAGATAAACTGAATTCATGAGCTTGACATTTGAAGCTTCCTTCAACAGAACCTTTGTCTCTATAATTTATTTATGCAAACCTACTGACATTTTGCCTTCCCACTTGTGTTCCTACCATTAACCAGTTGTTCAAGGTGTTCCTTGCTTGTAATTTCCTGTTTCTCTCTCCCAACATCCTAGTCAAATTCTATCCATTCATCAGAAGTTAGTTTTTTAATTAAGCTTTTGCTGACCATTGAAACCTACTGTGCTGTTTTCCATCCCCAACTTACTGAGCACTTCTGTCATTTTTCTCTTTTTTGATGGTTATTTTCTTTATGAGTAATATATAATTTAATTGCATGTGACAAAGTTGCCTTATATTTATACTGTCTTATATTTAATGTCTGTAATTTAAATTATCTTATTTTTAAAATTAAATTTTAAGCTGGTTTTAGGTGGAAATTATGTAACAGTTGTAAGTCCACAAAACAGGTATTTCAGTGCTTTTAAATGCCCAGCCAATTTTTGTATAATGGAGAATGACTGTTTCTATGATGTGATCTTTTGTCTTCCTGAACAGTAATAGTAATCTTTTTAATCCCTCAG
Seq C2 exon
GAGAGTTCTTAAAACTAAAAAAGGCTCTTCACAGAGCAGAAGCGGGATTCTGATAATACAGTTTATTTCAAGATGGCAACTGAATCAAAGAAAGCTACAGCTCAGAACCTTCAGGAGGATGAAGGACTTCTGATAGTGAAGATGGAAGAGGAAGATTTTGTCTGGAGGCAGGGTGCTTGCTTACAGAGGAATGATCCCCTCAGGCAGGAGCTCTGCCGGCGGCTGTTCCGGCAGTTCTGCTACCAGGATTCTCCCGGGCCCCGAGACGCACTGAGCCAGCTCCGGCAGCTCTGCTGTCAGTGGCTGAAGCCAGAAACCCAGACCAAGGAGCAGATCCTGGAGCTGCTAATTCTGGAACAGTTCCTGGCTATCCTGCCAGGGGATCTGCAGGCTTGGGTGCGTGAACGTTATCCAGAGAGTGGAGAGGAAGCAGTGACCCTACTGGAAGATTTAGAGAGAGGCACTGATGAAGCTGTACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031874:ENSBTAT00000003993:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.102
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=68.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]