HsaINT0186284 @ hg38
Intron Retention
Gene
ENSG00000197279 | ZNF165
Description
zinc finger protein 165 [Source:HGNC Symbol;Acc:HGNC:12953]
Coordinates
chr6:28080975-28085891:+
Coord C1 exon
chr6:28080975-28081530
Coord A exon
chr6:28081531-28085480
Coord C2 exon
chr6:28085481-28085891
Length
3950 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
ATAATATATTCTATCCACAGATG
3' ss Score
9.82
Exon sequences
Seq C1 exon
GTCCGGGTTTGGGGATCCAGATGTCCAGCCCCGTGTCCCCCTCCAAACATCCAGTCCCTCTCATATTGCCTTTGAAATTAGCAGCCTCTGGGTGACCAGACCTTGGCCCTCAGAGGAATCCCGGAGAAAGGTAGAACCAGCTTCGGCGTTGGGAACGCAGGCGCGCTTACGCATTTAGTGAGGGTTTGGCGGTCTCCATAGTTACCGCCGCCGCGCGTGACGTCATAGTGGAGCGCTGAGGGCTTGGTGGCGTGGGGTGGGGGCTGTCCTACTGATCCTGAATTTGGGGTCACTGGTAAGAGGAGTTGCCCATTCCAGCCAGGTGGAACGGGGAGGGGTGCCACATGTCTCAGATCTGCCATTGTCTGCGAAAAGAAACTGCTGCGAGGACCATCCCCAATCCCCTGCTTCCCTTGGGAAGAGTAACCGCCGTTTTGTAGGACACTTGGGGACAACCCCGCTTGTCCTGAAATTTATTGACACGGTAAATAGTATTTCCTGTGTGCCGAGGATGCAGTTAAACCAACACTGACCCCCTGCCCTTGAGAAACACAAG
Seq A exon
GTACTATGGGAGCCTTTACCAGCATGCCCCTTGAAGTCTCTGTTCTGCTTTGTGGTCTCTACCGGATTTCCCCTGACTGTCTCCCTCTCCACCAACAAAACTCTCACCCGTCTTCCCCTCCCGCAACATGCCCACCAAGACATGTTCATCCATCAGGAGCCCTGCTCTTTAACCTCCAACTTTCTCATCATAATTAATTACTCGTTCCTCTCTGTTCTCCTAGCGTTTCTTCACACATCTGCTTACCCATTTTTGTAAGTCCTCCTAACACAATATTATAAGGCACTAGATGCTCAATCAATATTTATTAGTTTAAAGCTACCAGCTTTAGGGGGACTCGGTTTTAAATAGATGAGAAGTGATAAAACACCTGGAGATAGTACTGTCAGCTGAGATAACATGTCATAGAACCAGCTGCTCAGCATAATTGAAATTTCATTCGGATTATATGGGCCTACTTTACACCCATCTTACTATGGTAAATGAGATCATGCTCATTAAGCATTAGGACACTACTTGGTTAGCGCATCTAGGAAACATAACCAGAAATATCAAAGAAATGGCCCAGTAAAATATAAGGGATTGAGACTCTCTGGTTAATATACCATGGAACTAACCCCCCTTTTTTTTCTTTATCATTGATAAATTTTGTTCTTACTTATACTCAAATTGTTTGTTTTCCAAGGTTCAGTCTGAACCTAGTGATATTTATTTCATACTCTTGGAGAATTAATACTGTTACATATCTTCAACTACCCTTTTCATGAATCTTGTCTGCCAAGACAAGCTCGGTCATGGAGACCCTAACCCAGTGGCGCTAGAGGAATTAAAGACACACACAGAAATATAGAGTGTGGAGTGGGAAATGAGGGGTCTCACAGCCTTCAGAGCTGAGAGCCTTGAACAGAGATTTACCCACTTATTTATTGACAGCAAGCCAGTGATAAGATTTACTGAAAGTATTCCTTACGGGAAATAAAGGGATGGGCCGAAATAAAGGGATGGGCTCTGGCTAGTTATCTGCAGCATGAACATGTCCTTAAGGCACAGATCGCTCATGCTATTGTTTTCTGCCCTGGGTGGGCCAGGTGTTCCTTGCCCTCATTCCAGTAAACTGACAACCTTCCAGCGTGGGCGTCAAGGCCATCATGAGCATGTCACAGTGCTGCAGAGATTTTGTTCATGGCCAGTTTTGGGGCCAGTTTATGGCCAGATTTGGGGGCCTGTTCCCAACACTTGTCAAAATCTGTCTTCCCATTCCAAATTCTTTTCCATTATTGAAATATCATTGTTTCTGTTGGAAATATTTTTCCAAGTAGATGTCTTATTATCATCTTAAATACAGATCATCCAAAACAGAAGTCATCTGAAACTTTCCTAATTTTTCCTTTCAATCATAAATATGAAGCCTTAAGAACAATTAATAATGCATGATCCTTAACCTCATGGAACATCAATCAGTTGATAAAAAAACAGCCAAACAACTAAAAATAATACAAGGACTTATATATTCATATGTGTATGTGTTAGGAATTGTAAGAACTCAGACTAGAGTTGAGCAATTTCTTAACAGAGGCAGTAGAATTCTTAGTCACTCCAGCCATCACACCCTGCAAGTTGATCTCACCATCAGTCTGCTGCTCATTCCTACTTCCTCTACTCTGTTCCTTTCCTTTCTGAATCTTTCTCATCCTTTATTGTCCAATTTAAGCCCCATGTTAAATACAGTGAGTTCTAAATTTCTCTTCAAAGAATCAGTATGTCAGTATGTTCAGTTCTTTGTTCTCCACTTTAAAGTTTAACCTCATCTCCTTGCCCCTAGTTTCAGTAAACAACCTTTTCCACCAGTTCCAATCAGTAGTTCACATCTATTCCCCTGGTCACCTGCTCTGTCCTGAGTCACCCCTGGTCATCTGCTCTGACCTGCATCACCTTTAATCGCCTGTTCTGTAACCGTCCTTCCCACTGAAACTGCTCACCCCGCCACTGTGGTTCATACCCCTGCTTTCTTTAAAACAGCCAGTTGGAATTAGCTTAGACTATGCAGTCCAACCCTAGCCAATAGGGGAACGACATAGCAGTAGGGACTACCTGCGTCAGAGATAAGAACCCCTTCCTCTCCCTTGATCAGGTATGCTCTCACCATTGCTCCATCTGCGAGACACACCTTTCTATAGAAGCAAAATTGCCTTGATGAGAAAATTCATGTTCGAGTGCTATTTCTTTTGCTGCACCGAAAATTTATTTCTAATACCCACCACCTCTAGGAAATACCTTCTACCATTCACAGTCTCTTCCCACCTCAGGACCGTTAGAACATTCAGTATCTCCACCATAAACTCATTTTATACTTCAACATTCAACATTTAACAAACATGTACAATGTATATGTCATGTGAAACGTTTTCTCATTTAAATCTTTTGTATCCATGTTTTATAATTTCTTCCCAACTAGTTCTTCCCACTGAATTTATTTCTTTCTCTCCCGCATCCTTGTCAAATCTTTTCTATTCTTCAAACTCAAAGACTTTTTGTTTAATCCATTAAGCTGTATATTAGAATACAGATTTTCCAGGCATATACTATACTGACCAAGTTACCATCTCTAGGAGCAGGCCCCTAGTCTGCATCTCCAGAGGTAGGGCCCAAGAACCTGTTTCTACCAAAGATCCCATATGATGATTAGGCAGCAAGCCCAGTGTCATATTCAGACTTTCTTGTAAACCATTGCTGTACAACTTCTAGCCCAATGCTTTGCTTGTGATAAGATTCTTAATAAAATGTGTGTTATTGCATCAGTCAGTAGTCAACTTAGTGAAATGTTTAGTAAAAGAACCTCAGGCCGGGCACGGTGGCTCACACCTGTAATCCCAGCAATTTGGGAGGCTGAGATGGGCAGTGGGCAGATCACAAGGTCAGGAGTTTGAGACCAGCTTGGCCAACATGGTGAAACCACATCTCTACTAAAAATACAAAAAATTAGCCAGGTGTGGCGGTGTGCATCTGAAATCCTAGCTACTCAGGAGGCTGAGGAAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGTGATAGAGTAAGACTCCCTCTCAAAAAACAAAAAAAAGAACCTCATACTTGCATGAATACAGTGGCCTCTATCTTTTCATATTGCCACCCACCCTAGAAATGAAGAACATATTCATCTCCACAGTGTTTAGCAGGTCATTCTGCTCAGAAGAATTGACTCCTCTTCAGTGACTCCCCAGTGCCTAAAAGATAAACTCCAAATTCATGAACTTCACAGTTGATGTTTTCTACAATAACATCTCCAAGCTTTGCCTCTATAATTTTCTTATACAAACCTACTAAACGTTTTGCTTTCCCTCTTCTGTATTCCTACTCTTACCCAATTGTTCAGACTGTTTCTCTGTTCGTAATTTCCTATTTCTTTCCCTCCCACATCCTAGTCAAATCTTTTCTATTCTTCAGAATTTCATGTTTGCATTAAGCTTCCCTTGACCATTGCAACCATCTGTATTTTTCTCATCTCCTATTTTATGAAGCACTTCTATCATTTTTCTTTTTTATCCTTATTTTCTCTGTGACTTTTAAAATTTAATAACATGTACATTGTTAATATTTAGCATTACATTTAAGTTTATTGTTTCTAATTTATCTTATTTTTAAATTTAAAAATTAAGCTATCTTGAAGTAGAAATCATTAACAGTTGTATTCTAGAAACCAAGTATGTCAGTGCTTTTGCATATAGTAAATGCCCAGTAAATTTTTGTGTAATGGAGAATGACGATTTTTATTATGTGGTCTTTCATCTTCTTAGACAGTAATAGTAACTTTTGATCCCTCAGGAGGACTCTTGAAACTAAAGAAGACCCTTTCCAAAGCAGTTCTGATAATATATTCTATCCACAG
Seq C2 exon
ATGGCTACAGAACCAAAGAAAGCTGCAGCCCAGAACTCTCCAGAGGATGAAGGACTTCTGATAGTGAAGATAGAAGAGGAAGAATTTATCCATGGGCAGGACACTTGCTTACAGAGAAGTGAACTCCTTAAGCAGGAGCTCTGCAGGCAGCTTTTTAGGCAGTTCTGCTACCAGGATTCTCCTGGACCTCGCGAGGCACTGAGCCGCCTCCGGGAGCTCTGCTGTCAGTGGCTGAAGCCAGAGATCCATACCAAGGAACAGATTCTGGAACTGCTGGTGCTAGAGCAGTTCCTGACCATCCTGCCAGGAGATTTGCAGGCCTGGGTACATGAACATTACCCAGAGAGTGGAGAGGAGGCAGTGACCATACTAGAAGATTTGGAGAGAGGCACTGATGAAGCAGTACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197279:ENST00000377325:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.153
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=68.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains