HsaINT0186284 @ hg19
Intron Retention
Gene
ENSG00000197279 | ZNF165
Description
zinc finger protein 165 [Source:HGNC Symbol;Acc:12953]
Coordinates
chr6:28048482-28053669:+
Coord C1 exon
chr6:28048482-28049308
Coord A exon
chr6:28049309-28053258
Coord C2 exon
chr6:28053259-28053669
Length
3950 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
ATAATATATTCTATCCACAGATG
3' ss Score
9.82
Exon sequences
Seq C1 exon
CTTTTCAGGAGTCCCTTCTGTTATTTAGCAAGACACACTACTACAATGGAGAAAAAAGATGCCCCCTCCTTCAAGCCCTGAGATCTTCAGGACTTTGGCGAAAAGTCTGCGCCCGAAGAGACCCAGGAAGGATTCTTGGAATTGTAGTCCAAAGGCATCCCGCCTTCTGCGCAGACTCACAAGTCCCTGTGGACGGAATTCTTGAAGTGTAGCGCCGCTCAGTCCTTCCACCGGAAGTGTCCGATCGGAATCAGCCCTGTCCGAGAGGTGAGTCCGGGTTTGGGGATCCAGATGTCCAGCCCCGTGTCCCCCTCCAAACATCCAGTCCCTCTCATATTGCCTTTGAAATTAGCAGCCTCTGGGTGACCAGACCTTGGCCCTCAGAGGAATCCCGGAGAAAGGTAGAACCAGCTTCGGCGTTGGGAACGCAGGCGCGCTTACGCATTTAGTGAGGGTTTGGCGGTCTCCATAGTTACCGCCGCCGCGCGTGACGTCATAGTGGAGCGCTGAGGGCTTGGTGGCGTGGGGTGGGGGCTGTCCTACTGATCCTGAATTTGGGGTCACTGGTAAGAGGAGTTGCCCATTCCAGCCAGGTGGAACGGGGAGGGGTGCCACATGTCTCAGATCTGCCATTGTCTGCGAAAAGAAACTGCTGCGAGGACCATCCCCAATCCCCTGCTTCCCTTGGGAAGAGTAACCGCCGTTTTGTAGGACACTTGGGGACAACCCCGCTTGTCCTGAAATTTATTGACACGGTAAATAGTATTTCCTGTGTGCCGAGGATGCAGTTAAACCAACACTGACCCCCTGCCCTTGAGAAACACAAG
Seq A exon
GTACTATGGGAGCCTTTACCAGCATGCCCCTTGAAGTCTCTGTTCTGCTTTGTGGTCTCTACCGGATTTCCCCTGACTGTCTCCCTCTCCACCAACAAAACTCTCACCCGTCTTCCCCTCCCGCAACATGCCCACCAAGACATGTTCATCCATCAGGAGCCCTGCTCTTTAACCTCCAACTTTCTCATCATAATTAATTACTCGTTCCTCTCTGTTCTCCTAGCGTTTCTTCACACATCTGCTTACCCATTTTTGTAAGTCCTCCTAACACAATATTATAAGGCACTAGATGCTCAATCAATATTTATTAGTTTAAAGCTACCAGCTTTAGGGGGACTCGGTTTTAAATAGATGAGAAGTGATAAAACACCTGGAGATAGTACTGTCAGCTGAGATAACATGTCATAGAACCAGCTGCTCAGCATAATTGAAATTTCATTCGGATTATATGGGCCTACTTTACACCCATCTTACTATGGTAAATGAGATCATGCTCATTAAGCATTAGGACACTACTTGGTTAGCGCATCTAGGAAACATAACCAGAAATATCAAAGAAATGGCCCAGTAAAATATAAGGGATTGAGACTCTCTGGTTAATATACCATGGAACTAACCCCCCTTTTTTTTCTTTATCATTGATAAATTTTGTTCTTACTTATACTCAAATTGTTTGTTTTCCAAGGTTCAGTCTGAACCTAGTGATATTTATTTCATACTCTTGGAGAATTAATACTGTTACATATCTTCAACTACCCTTTTCATGAATCTTGTCTGCCAAGACAAGCTCGGTCATGGAGACCCTAACCCAGTGGCGCTAGAGGAATTAAAGACACACACAGAAATATAGAGTGTGGAGTGGGAAATGAGGGGTCTCACAGCCTTCAGAGCTGAGAGCCTTGAACAGAGATTTACCCACTTATTTATTGACAGCAAGCCAGTGATAAGATTTACTGAAAGTATTCCTTACGGGAAATAAAGGGATGGGCCGAAATAAAGGGATGGGCTCTGGCTAGTTATCTGCAGCATGAACATGTCCTTAAGGCACAGATCGCTCATGCTATTGTTTTCTGCCCTGGGTGGGCCAGGTGTTCCTTGCCCTCATTCCAGTAAACTGACAACCTTCCAGCGTGGGCGTCAAGGCCATCATGAGCATGTCACAGTGCTGCAGAGATTTTGTTCATGGCCAGTTTTGGGGCCAGTTTATGGCCAGATTTGGGGGCCTGTTCCCAACACTTGTCAAAATCTGTCTTCCCATTCCAAATTCTTTTCCATTATTGAAATATCATTGTTTCTGTTGGAAATATTTTTCCAAGTAGATGTCTTATTATCATCTTAAATACAGATCATCCAAAACAGAAGTCATCTGAAACTTTCCTAATTTTTCCTTTCAATCATAAATATGAAGCCTTAAGAACAATTAATAATGCATGATCCTTAACCTCATGGAACATCAATCAGTTGATAAAAAAACAGCCAAACAACTAAAAATAATACAAGGACTTATATATTCATATGTGTATGTGTTAGGAATTGTAAGAACTCAGACTAGAGTTGAGCAATTTCTTAACAGAGGCAGTAGAATTCTTAGTCACTCCAGCCATCACACCCTGCAAGTTGATCTCACCATCAGTCTGCTGCTCATTCCTACTTCCTCTACTCTGTTCCTTTCCTTTCTGAATCTTTCTCATCCTTTATTGTCCAATTTAAGCCCCATGTTAAATACAGTGAGTTCTAAATTTCTCTTCAAAGAATCAGTATGTCAGTATGTTCAGTTCTTTGTTCTCCACTTTAAAGTTTAACCTCATCTCCTTGCCCCTAGTTTCAGTAAACAACCTTTTCCACCAGTTCCAATCAGTAGTTCACATCTATTCCCCTGGTCACCTGCTCTGTCCTGAGTCACCCCTGGTCATCTGCTCTGACCTGCATCACCTTTAATCGCCTGTTCTGTAACCGTCCTTCCCACTGAAACTGCTCACCCCGCCACTGTGGTTCATACCCCTGCTTTCTTTAAAACAGCCAGTTGGAATTAGCTTAGACTATGCAGTCCAACCCTAGCCAATAGGGGAACGACATAGCAGTAGGGACTACCTGCGTCAGAGATAAGAACCCCTTCCTCTCCCTTGATCAGGTATGCTCTCACCATTGCTCCATCTGCGAGACACACCTTTCTATAGAAGCAAAATTGCCTTGATGAGAAAATTCATGTTCGAGTGCTATTTCTTTTGCTGCACCGAAAATTTATTTCTAATACCCACCACCTCTAGGAAATACCTTCTACCATTCACAGTCTCTTCCCACCTCAGGACCGTTAGAACATTCAGTATCTCCACCATAAACTCATTTTATACTTCAACATTCAACATTTAACAAACATGTACAATGTATATGTCATGTGAAACGTTTTCTCATTTAAATCTTTTGTATCCATGTTTTATAATTTCTTCCCAACTAGTTCTTCCCACTGAATTTATTTCTTTCTCTCCCGCATCCTTGTCAAATCTTTTCTATTCTTCAAACTCAAAGACTTTTTGTTTAATCCATTAAGCTGTATATTAGAATACAGATTTTCCAGGCATATACTATACTGACCAAGTTACCATCTCTAGGAGCAGGCCCCTAGTCTGCATCTCCAGAGGTAGGGCCCAAGAACCTGTTTCTACCAAAGATCCCATATGATGATTAGGCAGCAAGCCCAGTGTCATATTCAGACTTTCTTGTAAACCATTGCTGTACAACTTCTAGCCCAATGCTTTGCTTGTGATAAGATTCTTAATAAAATGTGTGTTATTGCATCAGTCAGTAGTCAACTTAGTGAAATGTTTAGTAAAAGAACCTCAGGCCGGGCACGGTGGCTCACACCTGTAATCCCAGCAATTTGGGAGGCTGAGATGGGCAGTGGGCAGATCACAAGGTCAGGAGTTTGAGACCAGCTTGGCCAACATGGTGAAACCACATCTCTACTAAAAATACAAAAAATTAGCCAGGTGTGGCGGTGTGCATCTGAAATCCTAGCTACTCAGGAGGCTGAGGAAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGTGATAGAGTAAGACTCCCTCTCAAAAAACAAAAAAAAGAACCTCATACTTGCATGAATACAGTGGCCTCTATCTTTTCATATTGCCACCCACCCTAGAAATGAAGAACATATTCATCTCCACAGTGTTTAGCAGGTCATTCTGCTCAGAAGAATTGACTCCTCTTCAGTGACTCCCCAGTGCCTAAAAGATAAACTCCAAATTCATGAACTTCACAGTTGATGTTTTCTACAATAACATCTCCAAGCTTTGCCTCTATAATTTTCTTATACAAACCTACTAAACGTTTTGCTTTCCCTCTTCTGTATTCCTACTCTTACCCAATTGTTCAGACTGTTTCTCTGTTCGTAATTTCCTATTTCTTTCCCTCCCACATCCTAGTCAAATCTTTTCTATTCTTCAGAATTTCATGTTTGCATTAAGCTTCCCTTGACCATTGCAACCATCTGTATTTTTCTCATCTCCTATTTTATGAAGCACTTCTATCATTTTTCTTTTTTATCCTTATTTTCTCTGTGACTTTTAAAATTTAATAACATGTACATTGTTAATATTTAGCATTACATTTAAGTTTATTGTTTCTAATTTATCTTATTTTTAAATTTAAAAATTAAGCTATCTTGAAGTAGAAATCATTAACAGTTGTATTCTAGAAACCAAGTATGTCAGTGCTTTTGCATATAGTAAATGCCCAGTAAATTTTTGTGTAATGGAGAATGACGATTTTTATTATGTGGTCTTTCATCTTCTTAGACAGTAATAGTAACTTTTGATCCCTCAGGAGGACTCTTGAAACTAAAGAAGACCCTTTCCAAAGCAGTTCTGATAATATATTCTATCCACAG
Seq C2 exon
ATGGCTACAGAACCAAAGAAAGCTGCAGCCCAGAACTCTCCAGAGGATGAAGGACTTCTGATAGTGAAGATAGAAGAGGAAGAATTTATCCATGGGCAGGACACTTGCTTACAGAGAAGTGAACTCCTTAAGCAGGAGCTCTGCAGGCAGCTTTTTAGGCAGTTCTGCTACCAGGATTCTCCTGGACCTCGCGAGGCACTGAGCCGCCTCCGGGAGCTCTGCTGTCAGTGGCTGAAGCCAGAGATCCATACCAAGGAACAGATTCTGGAACTGCTGGTGCTAGAGCAGTTCCTGACCATCCTGCCAGGAGATTTGCAGGCCTGGGTACATGAACATTACCCAGAGAGTGGAGAGGAGGCAGTGACCATACTAGAAGATTTGGAGAGAGGCACTGATGAAGCAGTACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197279-ZNF165:NM_003447:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.153
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=68.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)