Special

ENSG00000204642 @ hg38

Biotype
protein_coding
Gene Symbol
HLA-F
Description
major histocompatibility complex, class I, F [Source:HGNC Symbol;Acc:HGNC:4963]
Coordinates
chr6:29722775-29738528:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
56
chr6:29725454-29725509
+
14.67
58.39
0
Alternative 3'ss
0
NA
+
8.96
100
0
Alternative 3'ss
112
chr6:29723658-29723769
+
91.04
100
0
Exon Skipping
33
chr6:29726011-29726043
+
91.76
38.12
0
Exon Skipping
65
chr6:29725120-29725184
+
95.21
26.88
0
Exon Skipping
222
chr6:29723306-29723527
+
89.74
97.3
0
Intron Retention
305
chr6:29723001-29723305
+
20.71
35.77
0
Intron Retention
130
chr6:29723528-29723657
+
20.76
66.84
0
Intron Retention
245
chr6:29723928-29724172
+
9.88
41.83
0
Intron Retention
447
chr6:29725564-29726010
+
17.01
70.55
0
Intron Retention
359
chr6:29726044-29726402
+
21.82
100
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000067212 H2-T23 6-to-30
Mouse mm10 ENSMUSG00000067235 H2-Q10 6-to-30
Mouse mm10 ENSMUSG00000073409 H2-Q6 6-to-30
Mouse mm9 ENSMUSG00000067212 H2-T23 6-to-30
Mouse mm9 ENSMUSG00000067235 H2-Q10 6-to-30
Mouse mm9 ENSMUSG00000073406 H2-Bl 6-to-30
Mouse mm9 ENSMUSG00000073409 H2-Q6 6-to-30
Mouse mm9 ENSMUSG00000079491 H2-T10 6-to-30
Rat rn6 ENSRNOG00000000763 RT1-M3-1 6-to-20
Rat rn6 ENSRNOG00000048951 LOC100364500 6-to-20
Rat rn6 ENSRNOG00000050998 AABR07044397.1 6-to-20
Rat rn6 ENSRNOG00000059770 AABR07044383.1 6-to-20
Rat rn6 ENSRNOG00000060412 RT1-M4 6-to-20
Cow bosTau6 ENSBTAG00000002069 BOLA 6-to-10
Cow bosTau6 ENSBTAG00000005182 BOLA 6-to-10
Cow bosTau6 ENSBTAG00000008959 6-to-10
Cow bosTau6 ENSBTAG00000019386 BOLA-NC 6-to-10
Cow bosTau6 ENSBTAG00000022590 BOLA 6-to-10
Chicken galGal4 ENSGALG00000004617 8-to-17
Chicken galGal4 ENSGALG00000024372 BFIV21 8-to-17
Chicken galGal4 ENSGALG00000027944 8-to-17
Chicken galGal4 ENSGALG00000027955 8-to-17
Chicken galGal4 ENSGALG00000029093 8-to-17
Chicken galGal3 ENSGALG00000004617 8-to-17
Chicken galGal3 ENSGALG00000024372 F1NM79_CHICK 8-to-17