Special

FBgn0000015 @ dm6

Biotype
protein_coding
Gene Symbol
Abd-B
Description
The gene Abdominal B is referred to in FlyBase by the symbol DmelAbd-B (CG11648, FBgn0000015). It is a protein_coding_gene from Dmel. It has 11 annotated transcripts and 11 polypeptides (4 unique). Gene sequence location is 3R:16927212..16972236. Its molecular function is described by: DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding; transcription regulatory region sequence-specific DNA binding. It is involved in the biological process described with 25 unique terms, many of which group under: insemination; spiracle morphogenesis, open tracheal system; genital disc anterior/posterior pattern formation; positive regulation of transcription, DNA-templated; gland development. 237 alleles are reported. The phenotypes of these alleles manifest in: imaginal tissue; presumptive embryonic/larval system; non-connected developing system; male accessory gland secondary cell; imaginal disc primordium. The phenotypic classes of alleles include: cell number defective; sterile; increased mortality; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis.
Coordinates
chr3R:16927210-16972236:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
40.21
71.43
0
Alternative 3'ss
3
chr3R:16931315-16931317
-
59.79
71.43
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000123364 HOXC13 1-to-17
Human hg38 ENSG00000123388 HOXC11 1-to-17
Human hg38 ENSG00000128709 HOXD9 1-to-17
Human hg38 ENSG00000253293 HOXA10 1-to-17
Human hg19 ENSG00000123364 HOXC13 1-to-17
Human hg19 ENSG00000123388 HOXC11 1-to-17
Human hg19 ENSG00000128709 HOXD9 1-to-17
Human hg19 ENSG00000253293 HOXA10 1-to-17
Mouse mm10 ENSMUSG00000001819 Hoxd13 1-to-16
Mouse mm10 ENSMUSG00000020875 Hoxb9 1-to-16
Mouse mm10 ENSMUSG00000038203 Hoxa13 1-to-16
Mouse mm10 ENSMUSG00000049604 Hoxb13 1-to-16
Mouse mm10 ENSMUSG00000050368 Hoxd10 1-to-16
Mouse mm9 ENSMUSG00000001819 Hoxd13 1-to-16
Mouse mm9 ENSMUSG00000020875 Hoxb9 1-to-16
Mouse mm9 ENSMUSG00000038203 Hoxa13 1-to-16
Mouse mm9 ENSMUSG00000049604 Hoxb13 1-to-16
Mouse mm9 ENSMUSG00000050368 Hoxd10 1-to-16
Rat rn6 ENSRNOG00000001580 Hoxd9 1-to-23
Rat rn6 ENSRNOG00000001588 Hoxd13 1-to-23
Rat rn6 ENSRNOG00000007573 Hoxb9 1-to-23
Rat rn6 ENSRNOG00000051472 Hoxd11 1-to-23
Rat rn6 ENSRNOG00000061531 Hoxa11 1-to-23
Cow bosTau6 ENSBTAG00000004313 HOXD13 1-to-16
Cow bosTau6 ENSBTAG00000004314 HOXD12 1-to-16
Cow bosTau6 ENSBTAG00000005606 HOXC9 1-to-16
Cow bosTau6 ENSBTAG00000014735 HOXA13 1-to-16
Cow bosTau6 ENSBTAG00000025009 HOXB9 1-to-16
Chicken galGal4 ENSGALG00000001276 HOXB9 1-to-16
Chicken galGal4 ENSGALG00000009270 HOXD10 1-to-16
Chicken galGal4 ENSGALG00000028983 1-to-16
Chicken galGal3 ENSGALG00000001276 E1BQM6_CHICK 1-to-16
Chicken galGal3 ENSGALG00000009270 F1NZJ4_CHICK 1-to-16
Zebrafish danRer10 ENSDARG00000011579 hoxb10a 1-to-24
Zebrafish danRer10 ENSDARG00000031337 hoxa10b 1-to-24
Zebrafish danRer10 ENSDARG00000057859 hoxd10a 1-to-24
Zebrafish danRer10 ENSDARG00000059274 hoxd9a 1-to-24
Zebrafish danRer10 ENSDARG00000105013 hoxa9a 1-to-24